DRSC/TRiP Functional Genomics Resources

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Protein Alignment Armc3 and p120ctn

DIOPT Version :9

Sequence 1:XP_036018461.1 Gene:Armc3 / 70882 MGIID:1918132 Length:885 Species:Mus musculus
Sequence 2:NP_001036444.1 Gene:p120ctn / 3355143 FlyBaseID:FBgn0260799 Length:781 Species:Drosophila melanogaster


Alignment Length:736 Identity:140/736 - (19%)
Similarity:234/736 - (31%) Gaps:253/736 - (34%)


- Green bases have known domain annotations that are detailed below.


Mouse     9 VEPPPKDVFDPITIESKKAATVVLMLKSPEEDILAKACEAIYKFALKGEENKATLLELGAVEPLT 73
            :|....|:...:.......:.|:..|.:|...|.|.|...:.......:.||.....||.:.||.
  Fly   209 IEGSENDICSTMRWRDPNLSEVISFLSNPSSAIKANAAAYLQHLCYMDDPNKQRTRSLGGIPPLV 273

Mouse    74 KLLTHEDKTVRRNAMMIFGILASNSDVKKLLRELEVMNSVIAQLSPEEEVVIHEFASLCLANMSV 138
            :||:::                                      |||    ||:.|...|.|:|.
  Fly   274 RLLSYD--------------------------------------SPE----IHKNACGALRNLSY 296

Mouse   139 ---EYTGKVQIFEHGGLEPLIRLL-SSSDPDVKKNSIECIYNLVQDFQCRTTLQELNAIPPILEL 199
               ....|..|...||:..|:.|| .|.:.:||:.....::|:   ..|.             :|
  Fly   297 GRQNDENKRGIKNAGGIAALVHLLCRSQETEVKELVTGVLWNM---SSCE-------------DL 345

Mouse   200 LRSEYPIIQLLALKTLGVITCDKEARTMLKENQGLDHLTKILETKELNDLHVEALSVIANCLEDM 264
            .||   ||.    :.|..:.|     :::|.:.|.|.:.                     |.|..
  Fly   346 KRS---IID----EALVAVVC-----SVIKPHSGWDAVC---------------------CGETC 377

Mouse   265 DTMVLMQQTGSLKKVLSFAESSTIPDIQKNAAKA------IAKAAYDPENRKVFHEQEVEKCLVT 323
            .:.|....:|.|:.|.|..|.:.  ...:|....      :.:.:.:..|   ...:.||.|:..
  Fly   378 FSTVFRNASGVLRNVSSAGEHAR--GCLRNCEHLVECLLYVVRTSIEKNN---IGNKTVENCVCI 437

Mouse   324 LLG--------SDSDGTK---IAASQAI--SALCENLSC-------KEFFNTQGI---------- 358
            |..        .|.:..|   |...:.|  |:..|||.|       ||..|:..:          
  Fly   438 LRNLSYRCQEVDDPNYDKHPFITPERVIPSSSKGENLGCFGTNKKKKEANNSDALNEYNISADYS 502

Mouse   359 ------------------PQIVQ----LLRS-DNEEVREAAALALANLTT-----SSPANANAAA 395
                              |::||    ||:| .|.|..||||.|:.||:.     |....|....
  Fly   503 KSSVTYNKLNKGYEQLWQPEVVQYYLSLLQSCSNPETLEAAAGAIQNLSACYWQPSIDIRATVRK 567

Mouse   396 EADAIDPLINILSSKRDGAIANAATVLTNMATQEPLRAIIQNHEIMHALLGPLHSTNTL-VQSTA 459
            | ..:..|:.:|..:.|..:...||.|.|:|..:..:.:|..: .|..|:..|.|.|.. .|:|:
  Fly   568 E-KGLPILVELLRMEVDRVVCAVATALRNLAIDQRNKELIGKY-AMRDLVQKLPSGNVQHDQNTS 630

Mouse   460 ALTVAATACDVEARTQLRNCGGLVPLVGLLHSKNDEVRRHASWAVMVCAGDEPMAVELCRLGALN 524
            ..|:.|                ::..:..:..||.|..|                 .|...|.::
  Fly   631 DDTITA----------------VLATINEVIKKNPEFSR-----------------SLLDSGGID 662

Mouse   525 ILEEINRSLSRKNKF--------SEAAYNKLLNNNLSLKYSQTGYLSSSNIISDGFYDYGRINPG 581
            .|..|.:   ||.|:        |:..|....:|.|...|.:.|: ...:.:|..|         
  Fly   663 RLMNITK---RKEKYTSCVLKFASQVLYTMWQHNELRDVYKKNGW-KEQDFVSKHF--------- 714

Mouse   582 TKLLSLKELCLQELNDQRAILLVNNKSDTSPPPSMEDKSSDV-----GYGRSISSSSSLRRGSKE 641
                                     .:..:||.|..:.::.:     ..||:.....:::||:..
  Fly   715 -------------------------TAHNTPPSSPNNVNNTLNRPMASQGRTRYEDRTIQRGTST 754

Mouse   642 --KANFRFSAIFGSPTEEKSE 660
              .||....|:..:.:...||
  Fly   755 LYSANDSSGAVMSNESAMLSE 775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Armc3XP_036018461.1 armadillo repeat 22..52 CDD:293788 6/29 (21%)
PLN03200 <32..>182 CDD:215629 33/153 (22%)
armadillo repeat 60..96 CDD:293788 7/35 (20%)
armadillo repeat 104..136 CDD:293788 7/31 (23%)
Arm 143..178 CDD:395413 11/35 (31%)
armadillo repeat 143..177 CDD:293788 10/34 (29%)
armadillo repeat 184..218 CDD:293788 6/33 (18%)
armadillo repeat 225..259 CDD:293788 3/33 (9%)
armadillo repeat 319..343 CDD:293788 7/36 (19%)
armadillo repeat 350..385 CDD:293788 18/67 (27%)
SRP1 <358..>504 CDD:227396 40/184 (22%)
armadillo repeat 391..425 CDD:293788 8/33 (24%)
ARM 469..504 CDD:214547 4/34 (12%)
armadillo repeat 473..503 CDD:293788 4/29 (14%)
EDR1 <754..871 CDD:405130
p120ctnNP_001036444.1 ARM 227..341 CDD:237987 34/158 (22%)
armadillo repeat 227..252 CDD:293788 6/24 (25%)
armadillo repeat 260..296 CDD:293788 15/77 (19%)
armadillo repeat 304..339 CDD:293788 10/34 (29%)
ARM 307..442 CDD:237987 35/188 (19%)
armadillo repeat 347..392 CDD:293788 14/77 (18%)
armadillo repeat 515..556 CDD:293788 15/40 (38%)
ARM 516..643 CDD:237987 36/144 (25%)
armadillo repeat 562..596 CDD:293788 8/34 (24%)
armadillo repeat 601..641 CDD:293788 10/56 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2332
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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