DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NR2F1 and usp

DIOPT Version :9

Sequence 1:NP_005645.1 Gene:NR2F1 / 7025 HGNCID:7975 Length:423 Species:Homo sapiens
Sequence 2:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster


Alignment Length:463 Identity:147/463 - (31%)
Similarity:207/463 - (44%) Gaps:102/463 - (22%)


- Green bases have known domain annotations that are detailed below.


Human    25 PAAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVC 89
            |.:.:|......||:.|.         .|.|...|..|   .|..:.|.||....|.....|.:|
  Fly    55 PGSNSASSNNNSAGDAQM---------AQAPNSAGGSA---AAAVQQQYPPNHPLSGSKHLCSIC 107

Human    90 GDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRRE 154
            ||::||||||.::|||||.||||:||::|||.||.||||.||:..||:|||||.:|||..||:||
  Fly   108 GDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKRE 172

Human   155 AVQRGRMPPTQPNPGQYALTNGDPL--------------------------NG-HCYLSGYIS-- 190
            |||..|....:...|:.:.:.|...                          || ..:::..:|  
  Fly   173 AVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRD 237

Human   191 ----------------------LLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEW 233
                                  ..||..||.|       :||:....:..:|::..:.||..||:
  Fly   238 FSIERIIEAEQRAETQCGDRALTFLRVGPYST-------VQPDYKGAVSALCQVVNKQLFQMVEY 295

Human   234 ARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSM----------------------------- 269
            ||.:|.|..:.:.|||.||:..|.||.:.|.|.||:                             
  Fly   296 ARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQ 360

Human   270 PLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACG 334
            |..:. |..:...|.:......|.|..|  ||..|...|:|.|::|..|.||||||:|:..|..|
  Fly   361 PQQLF-LNQSFSYHRNSAIKAGVSAIFD--RILSELSVKMKRLNLDRRELSCLKAIILYNPDIRG 422

Human   335 LSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPI 399
            :...|.||..:||....|:|:.|.::|....||.:||||||:||::|....:.||..|:....|:
  Fly   423 IKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPL 487

Human   400 ETLIRDML 407
            |.|..:.|
  Fly   488 EELFLEQL 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NR2F1NP_005645.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..81 13/55 (24%)
NR_DBD_COUP_TF 86..158 CDD:143516 48/71 (68%)
NR_LBD_COUP-TF 184..419 CDD:132746 79/277 (29%)
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 49/75 (65%)
NR_LBD_RXR_like 237..480 CDD:132741 73/252 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X118
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.910

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