DRSC/TRiP Functional Genomics Resources

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Protein Alignment TFAM and HmgD

DIOPT Version :10

Sequence 1:NP_003192.1 Gene:TFAM / 7019 HGNCID:11741 Length:246 Species:Homo sapiens
Sequence 2:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster


Alignment Length:107 Identity:26/107 - (24%)
Similarity:43/107 - (40%) Gaps:18/107 - (16%)


- Green bases have known domain annotations that are detailed below.


Human    50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV----- 109
            ||:|:|:|:.:........|.:||..|.||:.:|..:.||.:.|          ::||:.     
  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD----------KSEWEAKAAKA 59

Human   110 ---YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKE 148
               |...:..|:.....|.......:...|..|:.|...|||
  Fly    60 KDDYDRAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKE 101

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TFAMNP_003192.1 HMG-box_TFAM_rpt1 50..115 CDD:438802 18/72 (25%)
HMG-box_TFAM_rpt2 135..234 CDD:438803 6/14 (43%)
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 16/73 (22%)

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