DRSC/TRiP Functional Genomics Resources

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Protein Alignment TFAM and HmgZ

DIOPT Version :10

Sequence 1:NP_003192.1 Gene:TFAM / 7019 HGNCID:11741 Length:246 Species:Homo sapiens
Sequence 2:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster


Alignment Length:164 Identity:38/164 - (23%)
Similarity:60/164 - (36%) Gaps:63/164 - (38%)


- Green bases have known domain annotations that are detailed below.


Human    50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEI 114
            ||:|:|:|:.:..|.....|..||.:|.|::.:|..:.||.|.|          :.||:      
  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKD----------KTEWE------ 54

Human   115 SRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKG--DS 177
                                     :||:..|:|             ||..|.|  .||.|  ||
  Fly    55 -------------------------QKAIKMKEE-------------YNKAVKE--YEANGGTDS 79

Human   178 --PQEKLKTVKENWKNLSDSEKELYIQHAKEDET 209
              |:::.|...:..|.....|..   :..:|||:
  Fly    80 GAPKKRKKAAAKPAKKAKKKESS---EEEEEDES 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TFAMNP_003192.1 HMG-box_TFAM_rpt1 50..115 CDD:438802 18/64 (28%)
HMG-box_TFAM_rpt2 135..234 CDD:438803 20/79 (25%)
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 24/119 (20%)

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