DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TCF12 and Fer1

DIOPT Version :9

Sequence 1:XP_011520261.1 Gene:TCF12 / 6938 HGNCID:11623 Length:718 Species:Homo sapiens
Sequence 2:NP_001262334.1 Gene:Fer1 / 2768661 FlyBaseID:FBgn0037475 Length:256 Species:Drosophila melanogaster


Alignment Length:168 Identity:47/168 - (27%)
Similarity:76/168 - (45%) Gaps:39/168 - (23%)


- Green bases have known domain annotations that are detailed below.


Human   570 SSDDMKSDDESSQKDIKVSSRGRTSSTNEDEDLNPEQ----------KIEREK------ERRMAN 618
            |||....|:.||:.|.:  ....:|..|.|:: |.|:          |..|.|      ::|.|.
  Fly    30 SSDYFFGDEHSSESDDE--DDAYSSGFNSDQE-NTEKTFCPFSRRSHKPRRLKCASQMAQQRQAA 91

Human   619 NARERLRVRDINEAFKELGRMCQLHLKS---EKPQTKLLILHQAVAVILSLEQQV-RERNLNPKA 679
            |.|||.|::.|||||:.|    :.|:.:   ||..:|:..|..|::.|..|.:.| :::|.|...
  Fly    92 NLRERRRMQSINEAFEGL----RTHIPTLPYEKRLSKVDTLKLAISYITFLSEMVKKDKNGNEPG 152

Human   680 ACLKRREEEKVSAVSAEPPTTLPGTHPGLSETTNPMGH 717
            ..|:|..::       |||..:.     |.:.|..:.|
  Fly   153 LSLQRNYQK-------EPPKKII-----LKDRTGGVAH 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TCF12XP_011520261.1 CytochromB561_N 287..>460 CDD:286826
HLH 619..672 CDD:197674 20/56 (36%)
Fer1NP_001262334.1 HLH 92..144 CDD:197674 20/55 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.