DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBP and Trf

DIOPT Version :10

Sequence 1:NP_003185.1 Gene:TBP / 6908 HGNCID:11588 Length:339 Species:Homo sapiens
Sequence 2:NP_476939.1 Gene:Trf / 34102 FlyBaseID:FBgn0010287 Length:224 Species:Drosophila melanogaster


Alignment Length:196 Identity:113/196 - (57%)
Similarity:148/196 - (75%) Gaps:2/196 - (1%)


- Green bases have known domain annotations that are detailed below.


Human   143 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREP 207
            :.|..|:....|......|  :|||||:|.::.|:||||.|..|.||:||:||||..||||:..|
  Fly    31 LQPQQPVALVEPKDAQHEI--RLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSP 93

Human   208 RTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEG 272
            |.|||||.:||::||||::|.::.:.:||:||::||||||.||:::|:||:|.:.|::||||||.
  Fly    94 RCTALIFRTGKVICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLEN 158

Human   273 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 337
            |...|.||||||||:||||||||:||||||||||:||||.||||.|.:|.:..|.|.|||..|||
  Fly   159 LNHVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 223

Human   338 T 338
            |
  Fly   224 T 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPNP_003185.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
polyglutamine repeat 58..95
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..159 3/15 (20%)
PLN00062 162..338 CDD:177693 107/175 (61%)
Repetitive region 165..241 43/75 (57%)
Repetitive region 255..332 51/76 (67%)
TrfNP_476939.1 TBP_eukaryotes 50..221 CDD:239952 105/170 (62%)
Blue background indicates that the domain is not in the aligned region.

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