Sequence 1: | NP_599150.1 | Gene: | TARBP2 / 6895 | HGNCID: | 11569 | Length: | 366 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_476751.1 | Gene: | stau / 37065 | FlyBaseID: | FBgn0003520 | Length: | 1026 | Species: | Drosophila melanogaster |
Alignment Length: | 468 | Identity: | 106/468 - (22%) |
---|---|---|---|
Similarity: | 157/468 - (33%) | Gaps: | 143/468 - (30%) |
- Green bases have known domain annotations that are detailed below.
Human 18 SIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKA 82
Human 83 AKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFT--AAAAATPVPSVVLTRSPPM 145
Human 146 E---------LQPP---VSPQQSECNPVGALQELVVQKGWRLPEYTVTQESG--PAHRKEFTMTC 196
Human 197 RVERFIEIGSGTSKKLAKRNAAAK----------------------------------------- 220
Human 221 ----------------MLLRVHTVPLDARD----------------GNEV-------------EP 240
Human 241 DDDHFSIG----------------VGSRLDGLRNRGP--GCTWDSLRNSVGEKILSLRSCSLGSL 287
Human 288 GALGPACCRVLSELSEEQAFHVSYLDI------EELSLSGLCQCLVELSTQPATVCHGSATTREA 346
Human 347 ARGEAARRALQYL 359 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
TARBP2 | NP_599150.1 | Sufficient for interaction with PRKRA | 22..105 | 28/82 (34%) | |
DSRM_TARBP2_rpt1 | 27..98 | CDD:380719 | 26/70 (37%) | ||
Sufficient for interaction with PRKRA | 152..234 | 26/140 (19%) | |||
DSRM_TARBP2_rpt2 | 159..225 | CDD:380681 | 24/124 (19%) | ||
Sufficient for interaction with DICER1 | 228..366 | 38/185 (21%) | |||
Sufficient for interaction with PRKRA | 287..366 | 23/79 (29%) | |||
DSRM_TARBP2_rpt3 | 292..363 | CDD:380722 | 22/74 (30%) | ||
stau | NP_476751.1 | DSRM | 312..375 | CDD:214634 | |
DSRM | <529..555 | CDD:294045 | |||
DSRM | 579..644 | CDD:214634 | 24/64 (38%) | ||
DSRM | 712..780 | CDD:214634 | 22/67 (33%) | ||
Staufen_C | <953..1020 | CDD:293091 | 22/71 (31%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3732 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |