DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SYN1 and Syn

DIOPT Version :10

Sequence 1:NP_008881.2 Gene:SYN1 / 6853 HGNCID:11494 Length:705 Species:Homo sapiens
Sequence 2:NP_731459.2 Gene:Syn / 41247 FlyBaseID:FBgn0004575 Length:1041 Species:Drosophila melanogaster


Alignment Length:834 Identity:272/834 - (32%)
Similarity:386/834 - (46%) Gaps:203/834 - (24%)


- Green bases have known domain annotations that are detailed below.


Human     1 MNYLRRRLSDSNFMANL----PNGYMTDLQRP------QPP--------PPPPGAHSP-GATP-- 44
            :|:|:||.|..:..:.:    ||. :....||      :||        ||||....| ||.|  
  Fly    14 VNFLKRRFSSGDLSSEVDDVDPNS-LPPAARPIQDQPTKPPVAGGPPNMPPPPAPGQPAGAAPEL 77

Human    45 ----GPGTATAERSSGVAPAASPAAP-SPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGG-S 103
                |.|...|  ::..||....:|| ||..|.     .||...|:..|.||....:..:|.. .
  Fly    78 SLSFGAGKTPA--TAAPAPPRGVSAPTSPAKSR-----ESLLQRVQSLTGAARDQGASILGAAVQ 135

Human   104 GGAGRGGAASR----VLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVD 164
            ....|..|.|:    .|||:|:.:|||:|||:|:::||:.||:||||||.|:.:|:.|:.|..|.
  Fly   136 SATQRAPAFSKDKYFTLLVLDDQNTDWSKYFRGRRLHGDFDIRVEQAEFRDITVVSSADTGPVVT 200

Human   165 MEVLRNGVKVVRSLKPDFVLIRQHAFSMARNG--DYRSLVIGLQYAGIPSVNSLHSVYNFCDKPW 227
            |...|:|.:|.||.:||||||||    ..|:|  ||||.::||:|.|:||:|||||:|.|.||||
  Fly   201 MAAYRSGTRVARSFRPDFVLIRQ----PPRDGSSDYRSTILGLKYGGVPSINSLHSIYQFQDKPW 261

Human   228 VFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIA 292
            ||:.:::|.::||.:.||||:|||:||.:::...|.:|.|:|.||.|.|:...:::||...||.|
  Fly   262 VFSHLLQLQRRLGRDGFPLIEQTFFPNPRDLFQFTKFPSVLKAGHCHGGVATARLENQSALQDAA 326

Human   293 SVVA----LTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRY 353
            .:|:    .:..|.|.||:||||:.|.:||||.||||:||.|::||||||.||||||||.::::|
  Fly   327 GLVSGAGNDSHCYCTIEPYIDAKFSVHIQKIGNNYKAFMRKSITGNWKTNQGSAMLEQITLTEKY 391

Human   354 KLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMAQAL 418
            |.|||..||:|||:::|.:..:..||||::||....|:..||||.|:||::.|.:||..:| |.:
  Fly   392 KSWVDEISELFGGMEVCGLSVVVAKDGREYIISACDSTFALIGDTQEEDRRQIADLVSGRM-QNV 455

Human   419 PRQRQRDASPGR-------GSHGQTPS-PGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQ 475
            .|.......||:       .|..::|: .|..|    |...||||    ||.|.||||   |.|:
  Fly   456 CRPSMAQTGPGKLPSRSSVSSRAESPTDEGVAP----TPPLPAGP----RPAPMGGPP---PIPE 509

Human   476 RQGP---------------PLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPP 525
            |..|               .:.:.|...|...:.|:...:.:.....:.|..|.    |.|..|.
  Fly   510 RTSPAVGSIGRLSSRSSISEVPEEPSSSGPSTVGGVRRDSQTSQSSTISSSVSR----AGQRPPQ 570

Human   526 TQ------------------------------------------GQGRQSRPVAGGPGA------ 542
            ||                                          |.|..|.|.:.|||:      
  Fly   571 TQNSVVEDAEDTMKNLRKTFAGIFGDMXEIANKKRGRTASETSSGSGPGSVPSSAGPGSGFSSSF 635

Human   543 ---------------------PPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPG--- 583
                                 .|:..|||.|:....|..|:::...|.|.........|..|   
  Fly   636 LGKQFSFAGKGEGVISTQPTQRPSEEPPAIPTTASSAVRPESSVSVSDSRNTDTLTERAGAGYQP 700

Human   584 -----GQQRQGPPQKPPGPAGPT-----------RQASQAGPVPRTGPPTTQQPRPSGPGPAGRP 632
                 .|:|..|..|.|..:|..           ..:|.:..:.|.|......|.|:||.|    
  Fly   701 VTNYEQQERVNPFDKEPSKSGSAASIHTSSSSSISSSSISSRINRNGNAIQSPPPPAGPPP---- 761

Human   633 KPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDE 686
                        |||....|.|   ...|.|....|:|:        .|||:|:
  Fly   762 ------------PPPTNVTAVG---SNANSSSGYRNSFS--------SSLSKDK 792

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SYN1NP_008881.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..73 29/97 (30%)
A 1..28 7/30 (23%)
Synapsin_N 1..27 CDD:463155 7/29 (24%)
B, linker 29..112 28/99 (28%)
C, actin-binding and synaptic-vesicle binding 113..420 156/316 (49%)
Synapsin 115..212 CDD:460438 50/98 (51%)
CPSase_L_D2 214..416 CDD:473076 102/205 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 418..689 78/380 (21%)
D, Pro-rich linker 421..655 68/344 (20%)
PRK07764 <494..686 CDD:236090 52/279 (19%)
E 656..705 8/31 (26%)
SynNP_731459.2 Synapsin 150..246 CDD:460438 50/99 (51%)
CPSase_L_D2 248..452 CDD:473076 101/203 (50%)
PHA03307 425..>700 CDD:223039 64/290 (22%)

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