DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Itga9 and scb

DIOPT Version :9

Sequence 1:XP_038938627.1 Gene:Itga9 / 685004 RGDID:1311191 Length:1036 Species:Rattus norvegicus
Sequence 2:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster


Alignment Length:1210 Identity:282/1210 - (23%)
Similarity:489/1210 - (40%) Gaps:315/1210 - (26%)


- Green bases have known domain annotations that are detailed below.


  Rat    17 LLLALVAAGVPAGAYNIDAQRPVRFQGPP-----------GSFFGYAVLEHFHDNTRWVLVGAPK 70
            :.|||:|......|:|. ..||.|....|           .|:|||.::    .....::||||:
  Fly    11 IFLALLALISHIEAFNF-MPRPSRVINSPKHLKFHINQTRSSYFGYTLV----IRQTSIIVGAPR 70

  Rat    71 ADSKYST--SVKSPGAVFKCRV------------HTNPDRRCTELDMARERNRGESCGKTCRGDR 121
            |.|...:  ::...||:::|.:            ..|.|...:|.....||             :
  Fly    71 AQSTLESQRTINETGAIYRCSLTNGVCSPYVLDSRGNVDAPYSEYTFDSER-------------K 122

  Rat   122 DDEWMGVSLARQPKADGRVLACAHRWKNIYYETDHILPHGFCYLIPSNLQAKGR---MLIPCYEE 183
            |.:|:|.|:....|...::|.||.|:.......:|:  ||.||.:.:.:.:..:   .:.|...:
  Fly   123 DFQWLGGSMDGGTKDTDKLLVCAPRFYAPSSRDNHL--HGVCYWVNNTVASTPQHVTRISPLRLK 185

  Rat   184 YKKKYGEEHGS--------CQAGIAGFFTEE--LVIMGAPGSFYWAGTL---KVLNLTDNTYFKL 235
            .::...|::|:        .:.|::....::  ..::||||...|.|::   :.::..||.....
  Fly   186 SEQVKEEDNGNKASFFYIMGELGLSAHVADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASR 250

  Rat   236 NDDAIMNRR---------YT--------------------YLGYAVTAGHF--SHPSVTDVVGGA 269
            .|.:...||         ||                    |.||||::|.|  |:|:....|..|
  Fly   251 RDTSKALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATA 315

  Rat   270 PQ-DEGIGKVYIFRADRRSGTLIKIFQASGKKMGSYFGSSLCAVDLNMDGLSDLLVGAPM--FSE 331
            || ::..|:.|||  |.|..::.|.....|::.|.|||.|:.|.|||.||.:|::|.||.  ..:
  Fly   316 PQANKQSGEAYIF--DVRGKSIHKYHVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHALED 378

  Rat   332 IRDEGQVTVYLNQGHGVLEEQLTLTGDAAYNAHFGESIASLGDLDDDGFPDVAVGAPMEDDFAGT 396
            ..|.|.:.|::|:|....|.|: |.......|.||.:::.|||::.||:.|||||||...:  ||
  Fly   379 SHDNGAIYVFINKGFFNFERQI-LRSPVETMARFGTALSRLGDINHDGYNDVAVGAPFAGN--GT 440

  Rat   397 VYIYHGDAQGIVPQYSMKLSGRKINPI---LQMFGQSISGGIDMDGNGYPDVTVGAFLSDSVVLL 458
            |:||.|...|:..|.|.:|......|.   ..|||..:|.|.|:||||:.|..:||..:::|.|.
  Fly   441 VFIYLGSENGLRDQPSQRLDAPSQQPSKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLY 505

  Rat   459 RARPVITVDVSIFLPGSINITAPQCHDGQQPVNCLNVTVCFRFHGKNVPGEIGLNYNLTADVAQK 523
            ||.||:.|.      .::...:.:....|:.|   .:|.|:|           |:...|..:.|:
  Fly   506 RAYPVVKVH------ATVKSESREIKPEQEKV---KITACYR-----------LSTTSTDKLVQE 550

  Rat   524 EK--------GQLPRVYFVLLGET-AGQVSERLQLTHMDEVCHHYVAHVKRRVQDVISPIVFEAA 579
            ::        .||.||.|.   :| ..::|.::. .:..|.|..:...|:...:|:.:||..|..
  Fly   551 QELAIRIAMDKQLKRVKFT---QTQTNEISFKVN-ANFGEQCRDFETQVRYSEKDIFTPIDLEMH 611

  Rat   580 YSLGEHVIGEED----RELPDLTPVLRWKKGQRIAQKNQTVFERNCRSEDCAADLQLRGKLLLSS 640
            |.|.:.|...|:    ..:.|.|.       .:::.:| .:|...|.::.|.||||||.|     
  Fly   612 YELTKKVPDSEEFCETCAIVDPTE-------PKVSTQN-IIFSTGCATDVCTADLQLRSK----- 663

  Rat   641 VDEKTTHLALGAVKNISLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELLESDFL 705
             |...|:: ||:...:.||..|:|:|:.||....:...:..|.|      .::..:|::::: .:
  Fly   664 -DVSPTYI-LGSADTLRLNYEITNIGETAYLPQFNVTSTSRLAF------AQVPGNCKVVDA-VM 719

  Rat   706 KCSV--GFPFMRSKSKYEFSVIFDTSHLSGEEEIL-------------------------SFIVT 743
            .|.:  |.|..:..:. ..::.||.|.|||:..|:                         .|...
  Fly   720 VCDLNRGRPLAKGDTD-SVTISFDVSQLSGQSLIIHAEVFSTGYEQNPTDNRQTNVIGLKEFTEI 783

  Rat   744 AQSGNMERSE------------------------ALHDNTLTLTIPLVHEV--DTSITGIVSPTS 782
            ..||....|:                        .:...|::..||:.::|  .|:|..|::.||
  Fly   784 DASGGQTNSQIDLEHYSNSAEIVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTS 848

  Rat   783 FVYGESVDASNFIQLD--DQE---CHFQPVNITL---------------QVYNMGPS-------- 819
            .....|.| |..:.:|  ||.   ....||.:|.               |.|::..|        
  Fly   849 LKMQASYD-SQLLSIDLYDQNNTMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVHQTME 912

  Rat   820 TLPGSSVSISFPSR------LSPGGAEMF------QVQDMVVSQEKGNCSLQRNPTPCIIPQEQE 872
            .|..|.|:.:..||      ......|.:      :..|::....||...:.|            
  Fly   913 VLDTSMVATASMSRKRRDLKALTANREQYARISNVKAHDLLSDDFKGKLPVNR------------ 965

  Rat   873 NIFHTIFAFFSKSGRKVLDC-EKTGSFCLTLHCNLSALPKEESRAIDLYMLLNTEILKKDSSSVI 936
                ||          |.:| :...:.|:.....:...|:   ::|:|.|..:.::  .:.::::
  Fly   966 ----TI----------VFNCRDPEMTICVRAEMRVHFRPE---KSINLNMRYSVDL--NEVNAIL 1011

  Rat   937 -----QFMARAKVKVEPALRVVEIANGNPEETLVVFEALHNLEPR--------GYVVGWIIAISL 988
                 .|:....:|::        ..|:|..|  .|.....:||.        |..: |||.:|:
  Fly  1012 VDPWEYFVILTDLKLQ--------KKGDPTST--SFSINRRIEPNIISKHQETGLPI-WIIIVSV 1065

  Rat   989 LVGILIFLLLAVLLWKMGFFRRRYKEIIE--AEKNRKENE 1026
            :.|:|:...::.||:|.|||.|..|:.::  .::|..|.|
  Fly  1066 IGGLLLLSAISYLLYKFGFFNRTKKDELDRLVQQNPVEPE 1105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Itga9XP_038938627.1 Int_alpha 45..102 CDD:214549 17/81 (21%)
Int_alpha 245..295 CDD:214549 22/72 (31%)
Int_alpha 301..347 CDD:214549 20/47 (43%)
Int_alpha 362..415 CDD:214549 24/52 (46%)
Int_alpha 425..>467 CDD:214549 19/41 (46%)
Integrin_alpha2 460..904 CDD:400650 107/550 (19%)
scbNP_523750.2 Int_alpha 51..103 CDD:214549 13/55 (24%)
FG-GAP 350..388 CDD:280083 15/37 (41%)
Int_alpha 409..459 CDD:214549 24/51 (47%)
Int_alpha 473..>515 CDD:214549 20/47 (43%)
Integrin_alpha2 507..829 CDD:285619 72/368 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335743
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D105280at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.950

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