DRSC/TRiP Functional Genomics Resources

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Protein Alignment VAMP2 and nSyb

DIOPT Version :10

Sequence 1:NP_001317054.1 Gene:VAMP2 / 6844 HGNCID:12643 Length:118 Species:Homo sapiens
Sequence 2:NP_001261269.1 Gene:nSyb / 38196 FlyBaseID:FBgn0013342 Length:206 Species:Drosophila melanogaster


Alignment Length:120 Identity:78/120 - (65%)
Similarity:89/120 - (74%) Gaps:8/120 - (6%)


- Green bases have known domain annotations that are detailed below.


Human     1 MDRSATAATAPP--AAPAGEGGP------PAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLE 57
            |..:|.|..|||  .|||||||.      |..|..:.:.:|||||||||||||||||.||:||||
  Fly     1 MADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLE 65

Human    58 RDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIII 112
            ||.|||||||||||||.||||||..|.|||||:|.:|||||||:|||..:::.||
  Fly    66 RDSKLSELDDRADALQQGASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLVVVGII 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VAMP2NP_001317054.1 R-SNARE_VAMP2 32..94 CDD:277223 51/61 (84%)
nSybNP_001261269.1 R-SNARE_VAMP2 40..102 CDD:277223 51/61 (84%)

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