DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rnf133 and rnf128a

DIOPT Version :10

Sequence 1:NP_001037743.1 Gene:Rnf133 / 681395 RGDID:1596695 Length:381 Species:Rattus norvegicus
Sequence 2:NP_997780.1 Gene:rnf128a / 322325 ZFINID:ZDB-GENE-030131-1044 Length:389 Species:Danio rerio


Alignment Length:384 Identity:163/384 - (42%)
Similarity:226/384 - (58%) Gaps:38/384 - (9%)


- Green bases have known domain annotations that are detailed below.


  Rat     7 GPWQTSAPSFWLLKFSFIWLVSQNCCTASAVWTAYMNISF--HVGNRMLSELGETGVFGRSSILK 69
            ||..:.....|||..|.:.:.|.....||.:.|||:|||:  ...||......|.|::|:.|...
Zfish     2 GPLASRDVFSWLLLASVLQVSSVRLAEASYLCTAYLNISYTNPENNRSTWFQEEMGLYGQDSPKA 66

  Rat    70 RVAGVVV---PPEGKIQNACDPNTSFILPRNKEPWIALIERG-GCAFTQKIKVASENGARGVIIY 130
            .|.|.|.   |..|     ||.:|.:..|...:.|||||:|| ||.||:||.:|:.|||...||:
Zfish    67 YVKGNVYLASPTYG-----CDDDTFYGRPNGSKGWIALIQRGNGCTFTEKINIAAMNGAAAAIIF 126

  Rat   131 NFPGTGNQVFPMSHQAFEDIVVVMIGNVKGMEILHLIRKGVHVTVMVEVGRKHVIWLNHYFV--- 192
            |..|:.|:|..|||.. ..||.:||||.:|||::.|:.:||.|.:.:|||::|..|::||.|   
Zfish   127 NDFGSENRVIQMSHPG-TTIVAIMIGNYRGMELVQLLDQGVPVAIAIEVGKQHGPWMSHYSVFFV 190

  Rat   193 --SFMIVTTATLAYFTFYHIRRLWVARIEDRRWKRLTRELKKAFGQLQVRILKEGDEEVSPNADS 255
              ||.|||.||:.||.||..|||...|.::|..|:|..|.|||.||||||.|::||:|:.|:||:
Zfish   191 SISFFIVTAATVGYFIFYSARRLNSLRQQNRSQKKLKAEAKKAIGQLQVRTLRQGDQEIGPDADA 255

  Rat   256 CVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHGTCPMCKCDILKALGIQMDIEDGSDSLQVL 320
            |.:|.::||..:::.||||.|||||:||:||:|.|.||||||||||||||:::|:|   :..|:.
Zfish   256 CAVCIDSYKAGDVLSILTCNHFFHKSCIEPWLLEHRTCPMCKCDILKALGVELDVE---EQPQIS 317

  Rat   321 MSNELPGTFSAMEEELNNELPPARTSSKVT-------HVQEHPTSVNVGSQPPEAEETG 372
            :.:..|  ||. .|:|::| ..:.|.|:..       |..||       ..|||....|
Zfish   318 VPDFRP--FST-SEDLHSE-TASHTHSETASSGYASMHGNEH-------LAPPEGTHNG 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnf133NP_001037743.1 PA_GRAIL_like 43..177 CDD:239037 57/139 (41%)
HRD1 <183..>368 CDD:227568 89/196 (45%)
RING-H2_RNF128-like 254..302 CDD:438454 29/47 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 340..381 9/40 (23%)
rnf128aNP_997780.1 PA_GRAIL_like 38..172 CDD:239037 57/139 (41%)
HRD1 <185..>297 CDD:227568 60/111 (54%)
RING-H2_RNF128-like 254..302 CDD:438454 29/47 (62%)

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