DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rp1 and zormin

DIOPT Version :9

Sequence 1:XP_008761780.1 Gene:Rp1 / 681377 RGDID:1596713 Length:2150 Species:Rattus norvegicus
Sequence 2:NP_001261317.1 Gene:zormin / 2769001 FlyBaseID:FBgn0052311 Length:3664 Species:Drosophila melanogaster


Alignment Length:2298 Identity:412/2298 - (17%)
Similarity:727/2298 - (31%) Gaps:797/2298 - (34%)


- Green bases have known domain annotations that are detailed below.


  Rat     2 DYKLQL--STMPGISSNI---------FLS-KVSSKMSETPSTS---------FS--MIRLTSS- 42
            ::|||.  :|..||:|..         |:: |:.....||.|::         ||  .:.:||| 
  Fly   675 EHKLQFLQATWTGIASTFGELKSRGQRFINLKIVDPYLETKSSAQAVQETLNDFSKRQVDVTSSL 739

  Rat    43 EGQVPS------------RHSNVTHPTVAKRISFYKSGDPQF-----GGVRVVVNPRS-----FK 85
            |....|            :..:....||||.........|.|     ...:::::.|.     .:
  Fly   740 ENWTTSIAEKREVEYLLEKVMSDNEETVAKSTQVDTQLYPVFTSQSVDSKQLLISTREKLTNVIQ 804

  Rat    86 TFDALLDNLSRKVPLPFGVRNISTPRGRHSITKLEELEDGESYVCSHNKKVLPVDLDK------- 143
            ..:...|.:.:::....|::....|    |:.|:|::        .:|.::|...||.       
  Fly   805 DIERAQDEIQQRIQTTLGIQTKDQP----SLAKIEQV--------INNLRMLKAKLDGIKYDYRT 857

  Rat   144 -----------------------ARRRPRPWL-SSRSISTHVKLRSATATMPTTAPGLFRAPRRL 184
                                   ||::..|.. :.|||:.|.|.|......       ||:   |
  Fly   858 LVESVIQFLENIVQLRREIDDYFARQQKEPASGADRSIAEHEKFRDQCMDK-------FRS---L 912

  Rat   185 VVFRNGDPKTRRVVLLSRRITQSFEAFLQYLTQVMQYPVAKLYATDGRKVPSLQAVIL-----SS 244
            :        |:..:|:.|             .:|::.|.|:...|| |.:..|:.:.|     ||
  Fly   913 I--------TQSELLIDR-------------VRVLEPPGAREIDTD-RILKLLENLRLHFESNSS 955

  Rat   245 GAVVAAGR----EPFKPGNYDIQKYLLPVKLPGISHRVHRKGKAKIEKRKMSTHSVPRPQTDSLA 305
            ..:....|    |.|:....||.:     .|..:|.::|       |....|..|:...:|.|||
  Fly   956 ARMSTLERLEKIEQFRSDLEDIDR-----SLDSVSQQLH-------EINNQSVDSLAAAKTTSLA 1008

  Rat   306 ---SEKTYDCFSDFSVAPENYLALETHDSQTLSTYPSEDGVEKSI------------VFNQDGTM 355
               .|:|.:|      :....|....|..:...|..:.:.:||.|            :.|.:...
  Fly  1009 FEYFERTIEC------SMPRQLKSTRHQRRWGQTAHTIELLEKRIEKFTESTSQQLFITNPESER 1067

  Rat   356 TVVMKVRFKIKEETVKWTT----------TVNRA-DLSN-----DDEKSKISSYPGKTEDRSSSL 404
            .|..::| |:.|   ||.:          ::|:| |...     |.|..:||.:       .:|:
  Fly  1068 YVKDELR-KLNE---KWQSFKDQVKQKRKSLNQATDFFEVVEKIDAEYREISYF-------YTSV 1121

  Rat   405 KLVVPCSLSEDITDTTQQGSLTEEENTQMTEQQALSSSSAGWENASMEVGIQGSQKQVKHFYRPP 469
            ...||.     :.|:.:.|:|..:....:|.::|...|..  ::||.   ......:|...|...
  Fly  1122 SNKVPY-----LRDSVEAGNLVNDIENYVTSREAALRSKL--DSASQ---CAHDMNKVSSLYNDV 1176

  Rat   470 TPGPRRMRQKKSVIGTVTVVSETEVQEKQFSYREEREVGEKSKYHMFTHSCSKMSSVSNKLVQIS 534
            ....:...:.|..|..|....:.|.::|:...|:.|:..|:.|       ..|.:....:|.:  
  Fly  1177 MNIFQSFIKLKMDINVVQERLKQEQRQKEQRERDARDQAEREK-------AIKEAEAKERLHR-- 1232

  Rat   535 SDDERESALERTKESGPLKSHAINAGAIEITSQRVLKMCHNNALASTVPENSVVEEGTDDSAISG 599
               |.:|.||..::.          .||| .:||.|.     |....:.|.:|.||.....||..
  Fly  1233 ---EEQSRLENQRQQ----------AAIE-QAQRELA-----ARELALREQAVREEEARLQAIRE 1278

  Rat   600 KATIKHFRTCGNANDSFSSTTADTTLTSGNNCPNVRTISEVPSVGSPVLTTGLVNEFAHCGLTEH 664
            :||.:..        :......:..|       .::::.::......|....:.:|.......|.
  Fly  1279 QATREQL--------AREQAAREEEL-------RIQSLRDIARREEEVRLQNIRDEETRIRREEE 1328

  Rat   665 PGNGRQISSPFASKKKKKS------------------QQRMITSKDKKKVIETKGIPNKVGKIHR 711
            ....|:..|  .||:::::                  |||::|...:|.:        :|..|..
  Fly  1329 ERIRRENES--RSKREEEARIQREEITRLQTLRDQVDQQRIVTENIRKDI--------QVNSIFT 1383

  Rat   712 AGTIAQVVL---LQDSGGLDKEGRVREEELDTSP----------MVIESHD----IFPKGNSKF- 758
            ....|..:.   |:|:...:.:..|.|.|:..:|          :.|:::.    .|.||..:. 
  Fly  1384 ELRYASPLFTRPLKDAVSREGDRFVFECEVTGTPEPAVEWFKDGISIQTNSDYKTTFDKGICRLV 1448

  Rat   759 --------SKNFHKNKLNTVQNPKTQKLLAKRKS---------RPLKIKSIGELRKQETGQ---- 802
                    |..|.....|.|....|...|:.|::         |.|:....|:..:..:.|    
  Fly  1449 IEETFAADSARFSCRASNLVGTCDTNATLSVRENAAEVQLVPPRILRFLQSGKATEGSSFQFACV 1513

  Rat   803 -------------EDKVFLHSESKLCESNLEKQSLLHVFSSLEEDQKALHR-SQSQVETVTENWK 853
                         .||....|...:...|..:.:|......||:|  |::. |.|....:.....
  Fly  1514 VAGVPLPTVQWFKNDKCIDDSPDYVISYNNGEATLKFEEVFLEDD--AVYTCSASNPAGIEHCSA 1576

  Rat   854 GMTKKSLVP-KVNDLHVTVRNQRKQKGVKLKSGATVSEQHIATRADPLASLKKPDLTEGIPHHSV 917
            .:..:.|.| ::....|.:.|...:.|.|:|..|.|.                     |||...|
  Fly  1577 SLIVEPLEPTELPSFKVPLSNAMARVGQKIKLEAIVG---------------------GIPRPEV 1620

  Rat   918 KSYIQRWLQNINPYPDFEHRKSAPLGQDRSNVVNYN------SNGFPENN----LPTTSSKGKSF 972
                 .||.|..|:            |.|.:...|.      ...:|.:.    |...:..|:::
  Fly  1621 -----YWLHNGKPF------------QPRDSKYEYGRVTLIIPQAYPNDAGSYVLSAKNLAGEAY 1668

  Rat   973 LMESNKRKTKNANWKGNKNQETSKS--------------LVVKD--------------------- 1002
                   .:.|...||....|||.|              |.:||                     
  Fly  1669 -------TSCNVIVKGRLPNETSDSEMASDIEPIKPAVHLPLKDVSIFEGKPVRLDCVIVGQPEP 1726

  Rat  1003 -----NGEQPNKHSCESQ------------------DESLYD----SYLGPLHDNCTLSQTSIN- 1039
                 :.|:|.|.|.:.|                  |...|.    :..|....:|.|..|.:| 
  Fly  1727 EVIWYHNERPVKESADVQLLFQGDRCSLIIQEVYQEDAGHYKVVAINSAGEASSSCELKVTPLNQ 1791

  Rat  1040 -DPCTKSHLSTEKSRPEVKLVYQEMNFSTKRQTLEVAIQVDTMGENVPKDLLALLLQHLEAFIPN 1103
             :|.|::                    ..:||:|             |||              :
  Fly  1792 AEPATRA--------------------QAERQSL-------------PKD--------------S 1809

  Rat  1104 NQKHQNGISQLPGSLAEVVFPSAIYNSSTNLLLAWLLVLNLKRNMNSFCQSDAPKTTSRSSETAA 1168
            ..|.:..:|.:.....|.|......:....|...|.|.       |...|.|...||...||...
  Fly  1810 QPKFERLLSDVLADEGEQVVLEVQASGDQPLTAQWFLT-------NKELQLDQRITTQSDSELGV 1867

  Rat  1169 LLDVLKHVA----------ITEEADDLKAAVANLVESTKTCSGPSGREQDTAPANCIAASLHSVD 1223
            ...:|.:|:          :|..|.|.| ..::|:  .|:.:.|..|....:....|  ..|...
  Fly  1868 FKLILNNVSGDDKGVYTVKVTNPAGDAK-CFSHLI--VKSVNAPENRRSSQSSVEII--ERHQCP 1927

  Rat  1224 KCKENKSTQKSLLDEGYSVRGDCGPELCVLEMVSKSNNTPSEGHTVSMTYPPKGVNNQNDALFTS 1288
            :.||..|.::..:|           |:...|.:.|...||.    |...:..:.|:..|..:.||
  Fly  1928 EFKELFSDKQGEID-----------EVIKFECIVKGKPTPK----VHWFFNDQPVHGHNFLVSTS 1977

  Rat  1289 NDSSTMS-QRSTHNASFLGEACLLTDSLCSHKACAQKDNIYEAACLSDETHIPIRDCKTIEFVNS 1352
            .:...:: |:.||:|  :|:.           :|..::...:|.|              :.|:|.
  Fly  1978 GERQVLTIQKLTHDA--VGKI-----------SCVAENEAGKATC--------------VAFLNI 2015

  Rat  1353 KENKCTDNLELTEEIKTVDKVPKDLNILADSID-KNESDISTSSQNVNKLSSQG----IFLSKTH 1412
            :.:    .|..:.:::||.   ::.|..:..:. |.::..:||:..||......    :..|..|
  Fly  2016 RGS----GLPASSDVQTVS---QEHNTESSRVTIKKQTFTTTSTSQVNSYEGNAPQTEVHHSSAH 2073

  Rat  1413 LDSDKDYSPLEEFQNCPPKKIVNKK-KSVSSDKEDSRTSEEPRSITNSVTSSERNATSELESFEE 1476
            :|..     |::.....|:.:.:.. :.:...||.|..:.:.:|. :.:.||..|..|.: :..:
  Fly  2074 IDQS-----LKQLGQQRPEIVESHHYQELHKSKEMSSPTVQQKSF-SFIQSSGANGQSAV-AIPD 2131

  Rat  1477 SESQDTGIFNMKVRTEEKAAKESMQKESEARMSLELINISGRNIIEQGRRNTAFLETTGRGQVTP 1541
            |.::                   :::|...|.:..|   ||: |::||               ..
  Fly  2132 SPTR-------------------LRREIAPRFTTPL---SGK-IVDQG---------------AD 2158

  Rat  1542 PSLVFCYDSNKNTEKEMSVGETKMRVKKIVDSMENESYTDSSLNCNKQHRSPGTLDWSDYGSDSE 1606
            .|:...||...:.|         ::|:|....:..:::|..|..||:.     |::....|....
  Fly  2159 VSMEAIYDGFPSPE---------IKVEKNGGQLFEDAHTRISNKCNRV-----TIELKQVGVGDA 2209

  Rat  1607 SRYPCKALSYEHSDDTGQEREYPRGIVRRAIEKLYGKAEIIKPPFFHGSIHKSQVCPYNPVEVPC 1671
            .||...|     |:..||.......:|::.          |.||.|...:               
  Fly  2210 GRYAVTA-----SNTVGQSTSTADLVVKKT----------IFPPVFGRRL--------------- 2244

  Rat  1672 VKKTHFYESECQSLVSSEQVSRSSLMLQEFQEERQSEVDANGMGDS----FGDSSIEKVTKPSEH 1732
                            ..|||:..       |:...||:..|:.:.    ..|....|....|||
  Fly  2245 ----------------QAQVSKKG-------EKLTMEVEVTGLPEPTVTWLKDDKPLKDAGISEH 2286

  Rat  1733 GRVFMEK-------EKGKLIDNGKWLLRENHLWRVSLDNPGMYGNADTTS--------------- 1775
             |:..:.       ||.:..|:||:::|..        |.|  |.|.:.:               
  Fly  2287 -RLLAQGNSYRLIIEKAQTTDSGKYMVRAT--------NAG--GEAKSIADCAILEPSPERLQEV 2340

  Rat  1776 VDTLMDKNSIEVPYSHF---------------------GELAPGPTMAELSSSEI-------EEM 1812
            |.|::.:.....|.|.|                     .|:.....:..||.|::       .|.
  Fly  2341 VKTIVYETGPVAPASEFKTEVQKQIQNSENQQSYQNSQTEVTSANDLHGLSESKVITEHRCTTEA 2405

  Rat  1813 TQPLEVKCNYFNFPHGSDSEPFGEDFLDAQNTNCPKEKIPNHHKEEKRNSPS------ERTCTPV 1871
            |..||.|.||.:.|               :.|..||....|.......|:.:      :.|...:
  Fly  2406 TMRLEHKSNYLDLP---------------ELTTRPKTPTTNDTITITTNTATVSMDQPDLTQPTI 2455

  Rat  1872 TQTFASAGNKVHP-----VCSDVIKT-----QPLPGSSIT--------HGALQEGDSLDKLYALC 1918
            |.|..:...||.|     .|:.|:.|     |..|..::|        |.:.....|.|....:.
  Fly  2456 TNTTTTNTTKVPPPVPPKPCTPVVATTFGQQQQQPPQTLTSTRYEQSEHKSTTSSSSFDYFKKID 2520

  Rat  1919 GQHC----------PILTVIIQP 1931
            .:..          |:.||:.||
  Fly  2521 EETIIQRPNPLTFKPLDTVVRQP 2543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rp1XP_008761780.1 DCX 60..135 CDD:176357 11/84 (13%)
DCX 182..257 CDD:176357 17/83 (20%)
zorminNP_001261317.1 SPEC 126..332 CDD:238103
SPEC <504..641 CDD:295325
COG1340 960..1298 CDD:224259 82/419 (20%)
RILP-like <1190..1315 CDD:304877 31/167 (19%)
MAP7 1233..1365 CDD:283355 27/164 (16%)
I-set 1390..1479 CDD:254352 16/88 (18%)
IGc2 1403..1469 CDD:197706 11/65 (17%)
I-set 1491..1580 CDD:254352 15/90 (17%)
IGc2 1504..1570 CDD:197706 12/67 (18%)
I-set 1589..1675 CDD:254352 22/130 (17%)
Ig 1605..1675 CDD:299845 19/114 (17%)
I-set 1702..1786 CDD:254352 12/83 (14%)
Ig 1713..1786 CDD:299845 10/72 (14%)
I-set 1811..1902 CDD:254352 21/100 (21%)
Ig 1828..1892 CDD:143165 14/70 (20%)
I-set 1927..2015 CDD:254352 23/129 (18%)
IGc2 1940..2005 CDD:197706 17/92 (18%)
I-set 2142..2231 CDD:254352 25/126 (20%)
Ig 2158..2231 CDD:299845 18/91 (20%)
I-set 2238..2325 CDD:254352 25/135 (19%)
Ig 2254..2324 CDD:299845 19/80 (24%)
I-set 3566..3655 CDD:254352
Ig 3583..3650 CDD:143165
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1181
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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