Sequence 1: | XP_008761780.1 | Gene: | Rp1 / 681377 | RGDID: | 1596713 | Length: | 2150 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001261317.1 | Gene: | zormin / 2769001 | FlyBaseID: | FBgn0052311 | Length: | 3664 | Species: | Drosophila melanogaster |
Alignment Length: | 2298 | Identity: | 412/2298 - (17%) |
---|---|---|---|
Similarity: | 727/2298 - (31%) | Gaps: | 797/2298 - (34%) |
- Green bases have known domain annotations that are detailed below.
Rat 2 DYKLQL--STMPGISSNI---------FLS-KVSSKMSETPSTS---------FS--MIRLTSS- 42
Rat 43 EGQVPS------------RHSNVTHPTVAKRISFYKSGDPQF-----GGVRVVVNPRS-----FK 85
Rat 86 TFDALLDNLSRKVPLPFGVRNISTPRGRHSITKLEELEDGESYVCSHNKKVLPVDLDK------- 143
Rat 144 -----------------------ARRRPRPWL-SSRSISTHVKLRSATATMPTTAPGLFRAPRRL 184
Rat 185 VVFRNGDPKTRRVVLLSRRITQSFEAFLQYLTQVMQYPVAKLYATDGRKVPSLQAVIL-----SS 244
Rat 245 GAVVAAGR----EPFKPGNYDIQKYLLPVKLPGISHRVHRKGKAKIEKRKMSTHSVPRPQTDSLA 305
Rat 306 ---SEKTYDCFSDFSVAPENYLALETHDSQTLSTYPSEDGVEKSI------------VFNQDGTM 355
Rat 356 TVVMKVRFKIKEETVKWTT----------TVNRA-DLSN-----DDEKSKISSYPGKTEDRSSSL 404
Rat 405 KLVVPCSLSEDITDTTQQGSLTEEENTQMTEQQALSSSSAGWENASMEVGIQGSQKQVKHFYRPP 469
Rat 470 TPGPRRMRQKKSVIGTVTVVSETEVQEKQFSYREEREVGEKSKYHMFTHSCSKMSSVSNKLVQIS 534
Rat 535 SDDERESALERTKESGPLKSHAINAGAIEITSQRVLKMCHNNALASTVPENSVVEEGTDDSAISG 599
Rat 600 KATIKHFRTCGNANDSFSSTTADTTLTSGNNCPNVRTISEVPSVGSPVLTTGLVNEFAHCGLTEH 664
Rat 665 PGNGRQISSPFASKKKKKS------------------QQRMITSKDKKKVIETKGIPNKVGKIHR 711
Rat 712 AGTIAQVVL---LQDSGGLDKEGRVREEELDTSP----------MVIESHD----IFPKGNSKF- 758
Rat 759 --------SKNFHKNKLNTVQNPKTQKLLAKRKS---------RPLKIKSIGELRKQETGQ---- 802
Rat 803 -------------EDKVFLHSESKLCESNLEKQSLLHVFSSLEEDQKALHR-SQSQVETVTENWK 853
Rat 854 GMTKKSLVP-KVNDLHVTVRNQRKQKGVKLKSGATVSEQHIATRADPLASLKKPDLTEGIPHHSV 917
Rat 918 KSYIQRWLQNINPYPDFEHRKSAPLGQDRSNVVNYN------SNGFPENN----LPTTSSKGKSF 972
Rat 973 LMESNKRKTKNANWKGNKNQETSKS--------------LVVKD--------------------- 1002
Rat 1003 -----NGEQPNKHSCESQ------------------DESLYD----SYLGPLHDNCTLSQTSIN- 1039
Rat 1040 -DPCTKSHLSTEKSRPEVKLVYQEMNFSTKRQTLEVAIQVDTMGENVPKDLLALLLQHLEAFIPN 1103
Rat 1104 NQKHQNGISQLPGSLAEVVFPSAIYNSSTNLLLAWLLVLNLKRNMNSFCQSDAPKTTSRSSETAA 1168
Rat 1169 LLDVLKHVA----------ITEEADDLKAAVANLVESTKTCSGPSGREQDTAPANCIAASLHSVD 1223
Rat 1224 KCKENKSTQKSLLDEGYSVRGDCGPELCVLEMVSKSNNTPSEGHTVSMTYPPKGVNNQNDALFTS 1288
Rat 1289 NDSSTMS-QRSTHNASFLGEACLLTDSLCSHKACAQKDNIYEAACLSDETHIPIRDCKTIEFVNS 1352
Rat 1353 KENKCTDNLELTEEIKTVDKVPKDLNILADSID-KNESDISTSSQNVNKLSSQG----IFLSKTH 1412
Rat 1413 LDSDKDYSPLEEFQNCPPKKIVNKK-KSVSSDKEDSRTSEEPRSITNSVTSSERNATSELESFEE 1476
Rat 1477 SESQDTGIFNMKVRTEEKAAKESMQKESEARMSLELINISGRNIIEQGRRNTAFLETTGRGQVTP 1541
Rat 1542 PSLVFCYDSNKNTEKEMSVGETKMRVKKIVDSMENESYTDSSLNCNKQHRSPGTLDWSDYGSDSE 1606
Rat 1607 SRYPCKALSYEHSDDTGQEREYPRGIVRRAIEKLYGKAEIIKPPFFHGSIHKSQVCPYNPVEVPC 1671
Rat 1672 VKKTHFYESECQSLVSSEQVSRSSLMLQEFQEERQSEVDANGMGDS----FGDSSIEKVTKPSEH 1732
Rat 1733 GRVFMEK-------EKGKLIDNGKWLLRENHLWRVSLDNPGMYGNADTTS--------------- 1775
Rat 1776 VDTLMDKNSIEVPYSHF---------------------GELAPGPTMAELSSSEI-------EEM 1812
Rat 1813 TQPLEVKCNYFNFPHGSDSEPFGEDFLDAQNTNCPKEKIPNHHKEEKRNSPS------ERTCTPV 1871
Rat 1872 TQTFASAGNKVHP-----VCSDVIKT-----QPLPGSSIT--------HGALQEGDSLDKLYALC 1918
Rat 1919 GQHC----------PILTVIIQP 1931 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Rp1 | XP_008761780.1 | DCX | 60..135 | CDD:176357 | 11/84 (13%) |
DCX | 182..257 | CDD:176357 | 17/83 (20%) | ||
zormin | NP_001261317.1 | SPEC | 126..332 | CDD:238103 | |
SPEC | <504..641 | CDD:295325 | |||
COG1340 | 960..1298 | CDD:224259 | 82/419 (20%) | ||
RILP-like | <1190..1315 | CDD:304877 | 31/167 (19%) | ||
MAP7 | 1233..1365 | CDD:283355 | 27/164 (16%) | ||
I-set | 1390..1479 | CDD:254352 | 16/88 (18%) | ||
IGc2 | 1403..1469 | CDD:197706 | 11/65 (17%) | ||
I-set | 1491..1580 | CDD:254352 | 15/90 (17%) | ||
IGc2 | 1504..1570 | CDD:197706 | 12/67 (18%) | ||
I-set | 1589..1675 | CDD:254352 | 22/130 (17%) | ||
Ig | 1605..1675 | CDD:299845 | 19/114 (17%) | ||
I-set | 1702..1786 | CDD:254352 | 12/83 (14%) | ||
Ig | 1713..1786 | CDD:299845 | 10/72 (14%) | ||
I-set | 1811..1902 | CDD:254352 | 21/100 (21%) | ||
Ig | 1828..1892 | CDD:143165 | 14/70 (20%) | ||
I-set | 1927..2015 | CDD:254352 | 23/129 (18%) | ||
IGc2 | 1940..2005 | CDD:197706 | 17/92 (18%) | ||
I-set | 2142..2231 | CDD:254352 | 25/126 (20%) | ||
Ig | 2158..2231 | CDD:299845 | 18/91 (20%) | ||
I-set | 2238..2325 | CDD:254352 | 25/135 (19%) | ||
Ig | 2254..2324 | CDD:299845 | 19/80 (24%) | ||
I-set | 3566..3655 | CDD:254352 | |||
Ig | 3583..3650 | CDD:143165 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1181 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |