DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment BRCA2 and Brca2

DIOPT Version :9

Sequence 1:	NP_000050.3	Gene:	BRCA2 / 675	HGNCID:	1101	Length:	3418	Species:	Homo sapiens
Sequence 2:	NP_611925.2	Gene:	Brca2 / 37916	FlyBaseID:	FBgn0050169	Length:	971	Species:	Drosophila melanogaster

Alignment Length:	1109	Identity:	204/1109 - (18%)
Similarity:	386/1109 - (34%)	Gaps:	312/1109 - (28%)

- Green bases have known domain annotations that are detailed below.

Human   491 TSPVASSFQGIKKSIFRIRESPKETF---------------NASFSGHMTD--PNFKKETEASES 538
            |...|::...|...:.:|.|:.::||               |:.|.. :.|  .::.:.|...:.
  Fly    28 TVSAAANRSNIIDEMAKICEADRQTFAIARRTRGHERLAVDNSDFVA-VEDLILSYAEPTPEDQV 91

Human   539 GLEIHTVCSQKEDSLCPNLIDNGSWPATTTQNSVALKNAGLISTLKKKTNKFIYAIHDE--TSYK 601
            .:.:...||.      |...::...|:..::.....:|..:.:..:|:..|...|:.:|  ....
  Fly    92 EMIMSDFCSS------PTYAEDEDEPSHESEPWFRFRNKRIRTYSRKRDPKSHKAVQNEKRRGSS 150

Human   602 GKKIPKDQKSELINCSAQFEANAFEAPLTFANADSGLLHSSVKRSCSQNDSEEPTLSLTSSFGTI 666
            |..:.:|..:...:.:..|:|:            |..:|             |..|:|:..|
  Fly   151 GLSVQRDLNTSFTSMACDFDAS------------SQKIH-------------EVLLNLSQYF--- 187

Human   667 LRKCSRNETCSNNTVISQDLDY-KEAK------CNKEKLQLFITPEADSLSCLQEGQC------E 718
                |...|.|..|.:...:|. .||:      |...:|:..    .|.|  ||.|..      |
  Fly   188 ----SATATASGPTPVPSQIDLPTEARQDSGDECFNAELENL----RDDL--LQSGFTFEASFYE 242

Human   719 NDPKSKKVSDIKEEVLAAACHPVQHSKVE--------YSDTDFQSQKSLLYDHENASTLILTPTS 775
            |:.:.:....:.:.:...:...|..:::.        :||.|...:|:.:...||...|:
  Fly   243 NEHEQEGPGTMADTIYGDSMQSVPTTRLRLESGKRNVWSDADSTLKKADVEIAENKKLLM----- 302

Human   776 KDVLSNLVMISRGKESYKMSDKLKGNNYESDVELTKNIPMEKNQDVCALNENYKNVELLPPEKYM 840
                        |:...|..|..:..|:     :.:.||:.:......|.|..|:|....|:|.:
  Fly   303 ------------GQTQAKNVDIEENTNF-----ILEGIPLSEWLTPMELPEISKDVIKHIPDKKL 350

Human   841 RVASPSRKVQFNQNTNLRVIQKNQEETTSISKITVNPDSEELFSDNENNFVFQVAN--ERNNLAL 903
            ::...|:|.           ||:.:::.:......:..|.::.:.||...:....|  |:.||.
  Fly   351 KLEPSSQKE-----------QKSSKDSNASKVRGASKQSCDINTKNEGTTILDQPNAAEQENLL- 403

Human   904 GNTKELHE-------TDLTCVNEPIFKNSTMVLYGDTGDKQATQVSIKKDLVYVLAEENKNSVKQ 961
             |..||.|       ..:.|.|.|    ||                            :||::
  Fly   404 -NDGELLEEFLFNDWQPMQCSNGP----ST----------------------------SKNAI-- 433

Human   962 HIKMTLGQDLKSDI-SLNID--KIPEKNNDYMNKWAGLLGPISNHSFGGSFRTASNKEIKLSEH- 1022
                   |..|.:| |:|:|  :.|||.....::      .||:|...| .|..|.|.|::||.
  Fly   434 -------QGPKENINSINLDDKEQPEKQTPNKSQ------TISSHQLNG-IRKKSFKFIEVSEEM 484

Human  1023 NIKKSKMFFKDIEEQYPTSLACVEIVNTLALDNQKKLSKPQSINTVSAHLQSSVVVSDCKNSHIT 1087
            .||..:...|.:...|..|..|    |.          :.:..:...:.:..|...::.|::...
  Fly   485 KIKGEEFVDKVVSGLYHFSHKC----NL----------RTEEYSDNHSQVMESTQCAEFKSAPSK 535

Human  1088 P-QMLFSKQDFNSNHNLTPSQKAEITEL----STILEESGSQFEFTQFRKPSY----ILQKSTFE 1143
            | ::|..|:.:|:      ..|.::.|:    |.:..::.::.||..||..|.    |.:|...:
  Fly   536 PIEILDGKETYNA------IAKVDVGEINGKFSPLNNDTIAEPEFCGFRTASNKAIPISEKMKIK 594

Human  1144 VPENQMTILKTTSEECRDADLHVIMNAPSIGQVDSS--KQFEGTVEIKRKFAGLLKNDCNKSASG 1206
            ..|.........:.:..|..:|...:.|:...:|::  :..|.:.|::.|.:.|:..|.......
  Fly   595 TAEFMAEFQSKETIQQNDYLVHQPNDKPTSVGLDTALKRSIESSEEMRSKASKLVVVDTTMREPH 659

Human  1207 YLT------DENEVGFRGFYSAHGTKLNVSTEALQKAVKLF---------------SDIENI-SE 1249
            ..|      |.||..|.||.:|....:.: |||::|...:|               ||..:: ..
  Fly   660 QPTLDPVCRDLNESQFFGFRTASNKAIEI-TEAMEKRGAMFLAQSKATDQLNGWQPSDFPDVLPT 723

Human  1250 ETSAEVHPISLSSSKCHDSVVSMFKIENHNDKTVSE--------KNNKCQLILQNNIEMTTGTFV 1306
            ..:.|:|.|::.::|.            .|.|||||        .:|| .:::..|.::....|:
  Fly   724 SPNNEIHSINVENNKA------------VNTKTVSETEFFGFRTASNK-GIVISENTKIKVAQFM 775

Human  1307 EEITENYKRNTENEDNKYTAASRNSHNL------EFDGSDSSKNDTVC---IHKDETDLLFTDQH 1362
            .|.   ...:...:.|:.|..|..|.|:      |....||:...|.|   ..|:.:|:    :|
  Fly   776 SEF---QAADASTDSNQPTVISEESRNIDAKFVDEAAAEDSANKPTFCNVQSLKNTSDI----EH 833

Human  1363 NICLKLSGQFMKEGNTQIKEDLSDLTFLEVAKAQEACHGNTS-----------NKEQLTATKTEQ 1416
                 ....|..|.:.:.:..|.....:...:..:..|.:.|           .|:.:.|.:...
  Fly   834 -----FKHDFFVEHSAKEEHPLCSQPLVRTPRRSQEIHSSLSQLAGKSPLDQATKKSVIARRNLL 893

Human  1417 NIK-------DFETSDTFFQTASGKNISVAKESFNKIVNFFDQKPEELHNFSLNSELH--SDIRK 1472
            ::|       ..|||           .|.|..:..:    |..||........:.:|:  .|..|
  Fly   894 SLKRKRKIILSTETS-----------TSCALPTMER----FAPKPSSTSTPLADRDLNRSKDCTK 943

Human  1473 NKMD 1476
            |:.|
  Fly   944 NRQD 947

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
BRCA2	NP_000050.3	Interaction with PALB2	1..40
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	37..68
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	358..381
		Interaction with NPM1. /evidence=ECO:0000269\|PubMed:21084279	639..1000		72/393 (18%)
		BRCA2 1	1002..1036		11/34 (32%)
		Interaction with RAD51. /evidence=ECO:0000250\|UniProtKB:P97929	1003..2082		105/545 (19%)
		BRCA2	1003..1033	CDD:395509	10/30 (33%)
		BRCA2	1213..1243	CDD:395509	10/44 (23%)
		Interaction with POLH. /evidence=ECO:0000269\|PubMed:24485656	1338..1781		28/162 (17%)
		Required for stimulation of POLH DNA polymerization activity	1410..1595		15/76 (20%)
		BRCA2	1422..1452	CDD:395509	6/29 (21%)
		BRCA2	1518..1548	CDD:395509
		BRCA2	1665..1695	CDD:395509
		BRCA2	1973..2002	CDD:395509
		BRCA2 8	2051..2085
		BRCA2	2052..2082	CDD:395509
		Interaction with HSF2BP. /evidence=ECO:0000269\|PubMed:31242413	2270..2337
		Interaction with FANCD2	2350..2545
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	2430..2450
		Interaction with SEM1. /evidence=ECO:0000269\|PubMed:10373512, ECO:0000269\|PubMed:16205630	2481..2832
		BRCA-2_helical	2481..2667	CDD:401201
		BRCA-2_OB1	2670..2793	CDD:401152
		Nuclear export signal, masked by interaction with SEM1. /evidence=ECO:0000269\|PubMed:24013206	2682..2698
		BRCA2DBD_OB2	2804..3054	CDD:239940
		BRCA-2_OB3	3054..3186	CDD:401153
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	3393..3418
Brca2	NP_611925.2	None
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4751
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0006415
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
User_Submission	0	0.000	Not matched by this tool.
	2	1.900