DRSC/TRiP Functional Genomics Resources

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Protein Alignment SSR1 and l(1)G0320

DIOPT Version :9

Sequence 1:NP_003135.2 Gene:SSR1 / 6745 HGNCID:11323 Length:286 Species:Homo sapiens
Sequence 2:NP_001285058.1 Gene:l(1)G0320 / 326234 FlyBaseID:FBgn0028327 Length:302 Species:Drosophila melanogaster


Alignment Length:312 Identity:122/312 - (39%)
Similarity:179/312 - (57%) Gaps:46/312 - (14%)


- Green bases have known domain annotations that are detailed below.


Human     7 LLLLLLLVFPATVLFRGGPRGLLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDEPTDLVEDKE-E 70
            |:.|:|:|.|..:.....|....|.|      .|.|||.:::.|.:|..|..       ||.| :
  Fly     4 LMFLMLMVLPIVICTFSAPNKFGAYA------AEAVEDDLVDVEGEEGAVTG-------EDAEAD 55

Human    71 EDVSGEPEASPSADTTILFVK-----GE--DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQ 128
            ||......:||:|||.:||.|     |:  |.|....|:||:||||||.|:|::|:::||||||.
  Fly    56 EDSDTGSSSSPNADTYLLFTKPLYTPGQQLDLPGGKPVEFLIGFTNKGAEEFVIETVEASFRYPM 120

Human   129 DYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQT 193
            |:.::||||:|:..|..|.|..::|..|:|:|::...||||||.|.|.|:|.||..:.:||||:|
  Fly   121 DFNYFIQNFSAVAYNREVKPGFESTVSYTFLPSDQFAGRPFGLNIALAYRDANGIQYNEAVFNET 185

Human   194 VTVIEREDGLDGETIFMYMFLAGL-GLLVIVGLHQLL-ESRKRKRPIQK--VEMGTSSQNDVDMS 254
            |.:.|.::||||||.|:|:.|||: .||:::|...|| .|.||||...|  :|.||::.:.:|..
  Fly   186 VLISEVDEGLDGETFFLYVLLAGIVVLLLVIGQQYLLGSSGKRKRAAAKKVIETGTANDSTIDYD 250

Human   255 WIPQETLNQINKASPR---------------------RLPRKRAQKRSVGSD 285
            |:|||||..:.|:.|:                     :.|::|..|||.|.|
  Fly   251 WVPQETLRALQKSPPKSKTPKTSPKPTKPASPKAASQQSPKQRKVKRSAGDD 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SSR1NP_003135.2 TRAP_alpha 14..280 CDD:309139 114/298 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..83 14/44 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 261..286 10/46 (22%)
l(1)G0320NP_001285058.1 TRAP_alpha 4..297 CDD:281839 117/305 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165158681
Domainoid 1 1.000 208 1.000 Domainoid score I2877
eggNOG 1 0.900 - - E1_KOG1631
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2368
Inparanoid 1 1.050 208 1.000 Inparanoid score I3699
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52580
OrthoDB 1 1.010 - - D1349929at2759
OrthoFinder 1 1.000 - - FOG0005711
OrthoInspector 1 1.000 - - oto88830
orthoMCL 1 0.900 - - OOG6_103262
Panther 1 1.100 - - LDO PTHR12924
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4191
SonicParanoid 1 1.000 - - X5414
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.800

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