DRSC/TRiP Functional Genomics Resources

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Protein Alignment SRPRA and SrpRalpha

DIOPT Version :9

Sequence 1:NP_003130.2 Gene:SRPRA / 6734 HGNCID:11307 Length:638 Species:Homo sapiens
Sequence 2:NP_524887.2 Gene:SrpRalpha / 47251 FlyBaseID:FBgn0010391 Length:614 Species:Drosophila melanogaster


Alignment Length:650 Identity:338/650 - (52%)
Similarity:446/650 - (68%) Gaps:49/650 - (7%)


- Green bases have known domain annotations that are detailed below.


Human     1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHE-ALTLKYKLDNQFEL 64
            ||||..||:|||:|||......:|....:|:|||.|:|:||.....:..| .|.:::||||:.:|
  Fly     1 MLDFVVIFTKGGVVLWHSNASGNSFASCINSLIRGVILEERNTEAKYYEEDHLAVQFKLDNELDL 65

Human    65 VFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESS- 128
            |:...|||::.|.|:|..:.|:...|::|| .:|:       |...:||..::.|:|..|||:| 
  Fly    66 VYAAIFQKVIKLNYLDGFLADMQAAFKEKY-GDIR-------LGDDYDFDREYRRVLSAAEEASA 122

Human   129 -KIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGPLATSKPVPAEKS 192
             :::||.||:.:.:|:|:||.|.|||:. .:||.||..|.::               .|.|::..
  Fly   123 KQVKAPKTMRSYNESQKSKKTVASMIQD-DKKPVEKRVNIQE---------------APPPSKSQ 171

Human   193 GLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEKGKKAPRVWELGG-CANK 256
              |..|..|..:.|  :|..||.:..:|.....:.|...:||..|::.||| ||||:||| ..:.
  Fly   172 --PSSPPTGSPMDK--IIMEKRRKLREKLTPTKKTSPSDSKSSKPEKAGKK-PRVWDLGGNSKDA 231

Human   257 EVLDYSTPTTNGTPEAALSEDINL-IRGTGSGGQLQDLDCSSSDD--------EGAAQNSTKPSA 312
            .:||.|    ..:|:....::||. :.|| ..|.::|||..|.|:        ||.|:...:  :
  Fly   232 ALLDRS----RDSPDDVQYQNINSELVGT-MQGVIRDLDVESEDEADNEDASSEGEAEEQVQ--S 289

Human   313 TKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGT 377
            .||..||:....||:||:|::|..|::..|:|||||||:||||::||.:||:|||..|:||.|||
  Fly   290 KKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNVASEIAAKLCDSVAASLDGKQMGT 354

Human   378 FSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWL 442
            |.::.|.||:||.||||:||.|:||:|::||.::::|..|||.:.||||||||||||||||.|||
  Fly   355 FDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWL 419

Human   443 LENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIA 507
            :||.|:||||||||||||||||||||||.|:||||..||.||.||||:||||||||||||||||.
  Fly   420 IENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIK 484

Human   508 FARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAD 572
            ||.:...||||||||||||||.|||.:|:|||.||.||||||||||||||||||||||||::|||
  Fly   485 FAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLAD 549

Human   573 HSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 637
            :|..:.|.:||||||||||||||||||||||||||.:|||||||||||.||:::|..|||.:|||
  Fly   550 YSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLMK 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SRPRANP_003130.2 SRP-alpha_N 27..298 CDD:397968 89/275 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 132..244 33/111 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 283..316 12/40 (30%)
SRP54_N 318..389 CDD:397149 38/70 (54%)
SRalpha_C 419..635 CDD:349785 171/215 (80%)
SrpRalphaNP_524887.2 SRP-alpha_N 27..268 CDD:282006 89/274 (32%)
PRK14974 258..613 CDD:237875 237/356 (67%)
SRP54_N 299..374 CDD:214941 42/74 (57%)
SRP 396..592 CDD:239389 158/195 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165142845
Domainoid 1 1.000 346 1.000 Domainoid score I1042
eggNOG 1 0.900 - - E1_COG0552
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2364
Inparanoid 1 1.050 604 1.000 Inparanoid score I945
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53679
OrthoDB 1 1.010 - - D364694at33208
OrthoFinder 1 1.000 - - FOG0005144
OrthoInspector 1 1.000 - - oto88318
orthoMCL 1 0.900 - - OOG6_100631
Panther 1 1.100 - - LDO PTHR43134
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3103
SonicParanoid 1 1.000 - - X2595
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.800

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