Protein Alignment SRMS and LSB1

DIOPT Version :9

• Sequence 1: NP_543013.1
• Gene: SRMS / 6725
• HGNCID: 11298
• Length: 488
• Species: Homo sapiens
• Sequence 2: NP_011652.1
• Gene: LSB1 / 853037
• SGDID: S000003368
• Length: 241
• Species: Saccharomyces cerevisiae
• Alignment Length: 210
• Identity: 55/210 - (26%)
• Similarity: 76/210 - (36%)
• Gaps: 50/210 - (23%)

Human    58 ALYDFTARCGGELSVRRGDRLCALEEGGGYIFARRLSGQPSAGLVPITHVAKASPETLSDQPWYF 122
            |||||.|:..|:||::.||::..||:.....:  |.......|:.|..:|..|.  |.|..|...
Yeast    60 ALYDFEAQQDGDLSLKTGDKIQVLEKISPDWY--RGKSNNKIGIFPANYVKPAF--TRSASPKSA 120

Human   123 SGVSRTQAQQLLLSPPN-EPGAFLIRPSESSL-----GGYSLSVRAQAKVCHYRVSMAADGSLYL 181
            ...|.:...:..:.||: ||.|......:.|.     .||..:...|
Yeast   121 EAASSSTVSRPSVPPPSYEPAASQYPSQQVSAPYAPPAGYMQAPPPQ------------------ 167

Human   182 QKGRLFPGLEELLTYYKANWKLIQNPLLQPCMP-QKAPRQDVWERPH------SEF-ALGRKLGE 238
            |:....|.......||       |.|..|...| |:||   |..:|.      |.| :.|.|||.
Yeast   168 QQQAPLPYPPPFTNYY-------QQPQQQYAPPSQQAP---VEAQPQQSSGASSAFKSFGSKLGN 222

Human   239 -GYFGEVWEGLWLGS 252
             ..||   .|..:||
Yeast   223 AAIFG---AGSAIGS 234

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SRMS	NP_543013.1	SH3_Srms	55..109	CDD:212780	17/50 (34%)
		SH2	119..197	CDD:301589	13/83 (16%)
		PTKc_Srm_Brk	223..483	CDD:133248	12/38 (32%)
		STYKc	232..480	CDD:214568	9/22 (41%)
LSB1	NP_011652.1	SH3	55..108	CDD:214620	16/49 (33%)
		PRK14971	<100..>156	CDD:237874	14/57 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000006
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.000