DRSC/TRiP Functional Genomics Resources

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Protein Alignment SRF and bs

DIOPT Version :10

Sequence 1:NP_003122.1 Gene:SRF / 6722 HGNCID:11291 Length:508 Species:Homo sapiens
Sequence 2:NP_726438.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster


Alignment Length:494 Identity:183/494 - (37%)
Similarity:241/494 - (48%) Gaps:101/494 - (20%)


- Green bases have known domain annotations that are detailed below.


Human     1 MLPTQAGAAAALGRG-SALGGSLNRTPT---GRPGGGGGTRGANGGRVPGNGAGLGPGRLEREAA 61
            |.||:..:...|... |::|.|| ..|.   |.|..|.| |..:||.:...| |:.|  ::|...
  Fly     1 MDPTRGDSRYNLNYSMSSIGLSL-ADPADMYGNPALGAG-RPPSGGLLQNMG-GVPP--MQRPNP 60

Human    62 AAAATTPAPTAGALYSGSEGDSESGEEEEL--------------GAERRGLKRSLSE-------M 105
            ||.| .|||....|:|......:..::::.              ..::||||||.|:       .
  Fly    61 AAGA-PPAPQCQTLHSPQHASQQQQQQQQQQQQHQQQQQQQQQHPQQQRGLKRSGSDCYEDHHRS 124

Human   106 EIGMVVGGPE--ASAA---ATGGYGPVSGAVSGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRK 165
            ..|:.:.|.:  ||.|   :...|.|:....|....||||:||||||||:|||||||||||||||
  Fly   125 SGGLTLQGLDNVASGAVDDSVDNYNPLPNKKSPPANGKKTKGRVKIKMEYIDNKLRRYTTFSKRK 189

Human   166 TGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDP 230
            ||||||||||||||||||:|||||||||||||||||||||||||.||.||||||||||.|  |..
  Fly   190 TGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPDPP--SVG 252

Human   231 TTDQRMSATGFEETDLTYQVSESDS------------SGETKDTLKP---AFTVTNLPGTTSTIQ 280
            ..||||||||||||:|:|.:::.||            |.::.|...|   |...|.||.:.:.:.
  Fly   253 GGDQRMSATGFEETELSYNIADEDSKDDRSPTSSGNESDDSSDVEMPAEAAEVATKLPASKTEVS 317

Human   281 TAPSTS-TTMQVSSG-PSFPITNYLAPVSASVSPSAVSSANGTVLKSTGSGPVSSGGLMQLPTSF 343
            ..|:.| :....||| .:.|..||....::..|.|..:...|    |..|..|.|.      .|.
  Fly   318 APPAASCSAATASSGHKTMPALNYQTDTNSGPSTSTAAGGGG----SADSKYVYSA------ASI 372

Human   344 TLMPGGAVAQQVPVQAIQVHQAPQQASPSRDSSTDLTQTSSSGTVTLP-----ATIMTSSVPTTV 403
            ..:|...:.|.:....:|||                .:...:..||:|     |.::.|:..|..
  Fly   373 ANIPQKMLRQLIQSGHLQVH----------------AEEDGNQYVTIPLSSTAANLIKSNKLTAS 421

Human   404 GGHMMYPSPHAVMYAPTSGLGDGSLTVLNAFSQAPSTMQ 442
            |               :...|.|:....:|.:..|.|::
  Fly   422 G---------------SGASGSGTPVKNDASADKPLTIK 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SRFNP_003122.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..97 28/113 (25%)
MADS_SRF_like 142..223 CDD:238166 76/80 (95%)
Involved in dimerization 168..222 50/53 (94%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..240 13/20 (65%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 362..385 2/22 (9%)
bsNP_726438.1 MADS_SRF_like 166..247 CDD:238166 76/80 (95%)

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