DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SRF and bs

DIOPT Version :9

Sequence 1:NP_003122.1 Gene:SRF / 6722 HGNCID:11291 Length:508 Species:Homo sapiens
Sequence 2:NP_001286837.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster


Alignment Length:494 Identity:183/494 - (37%)
Similarity:241/494 - (48%) Gaps:101/494 - (20%)


- Green bases have known domain annotations that are detailed below.


Human     1 MLPTQAGAAAALGRG-SALGGSLNRTPT---GRPGGGGGTRGANGGRVPGNGAGLGPGRLEREAA 61
            |.||:..:...|... |::|.|| ..|.   |.|..|.| |..:||.:...| |:.|  ::|...
  Fly     1 MDPTRGDSRYNLNYSMSSIGLSL-ADPADMYGNPALGAG-RPPSGGLLQNMG-GVPP--MQRPNP 60

Human    62 AAAATTPAPTAGALYSGSEGDSESGEEEEL--------------GAERRGLKRSLSE-------M 105
            ||.| .|||....|:|......:..::::.              ..::||||||.|:       .
  Fly    61 AAGA-PPAPQCQTLHSPQHASQQQQQQQQQQQQHQQQQQQQQQHPQQQRGLKRSGSDCYEDHHRS 124

Human   106 EIGMVVGGPE--ASAA---ATGGYGPVSGAVSGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRK 165
            ..|:.:.|.:  ||.|   :...|.|:....|....||||:||||||||:|||||||||||||||
  Fly   125 SGGLTLQGLDNVASGAVDDSVDNYNPLPNKKSPPANGKKTKGRVKIKMEYIDNKLRRYTTFSKRK 189

Human   166 TGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDP 230
            ||||||||||||||||||:|||||||||||||||||||||||||.||.||||||||||.|  |..
  Fly   190 TGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPDPP--SVG 252

Human   231 TTDQRMSATGFEETDLTYQVSESDS------------SGETKDTLKP---AFTVTNLPGTTSTIQ 280
            ..||||||||||||:|:|.:::.||            |.::.|...|   |...|.||.:.:.:.
  Fly   253 GGDQRMSATGFEETELSYNIADEDSKDDRSPTSSGNESDDSSDVEMPAEAAEVATKLPASKTEVS 317

Human   281 TAPSTS-TTMQVSSG-PSFPITNYLAPVSASVSPSAVSSANGTVLKSTGSGPVSSGGLMQLPTSF 343
            ..|:.| :....||| .:.|..||....::..|.|..:...|    |..|..|.|.      .|.
  Fly   318 APPAASCSAATASSGHKTMPALNYQTDTNSGPSTSTAAGGGG----SADSKYVYSA------ASI 372

Human   344 TLMPGGAVAQQVPVQAIQVHQAPQQASPSRDSSTDLTQTSSSGTVTLP-----ATIMTSSVPTTV 403
            ..:|...:.|.:....:|||                .:...:..||:|     |.::.|:..|..
  Fly   373 ANIPQKMLRQLIQSGHLQVH----------------AEEDGNQYVTIPLSSTAANLIKSNKLTAS 421

Human   404 GGHMMYPSPHAVMYAPTSGLGDGSLTVLNAFSQAPSTMQ 442
            |               :...|.|:....:|.:..|.|::
  Fly   422 G---------------SGASGSGTPVKNDASADKPLTIK 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SRFNP_003122.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..97 28/113 (25%)
MADS_SRF_like 142..223 CDD:238166 76/80 (95%)
Involved in dimerization 168..222 50/53 (94%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..240 13/20 (65%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 362..385 2/22 (9%)
bsNP_001286837.1 MADS_SRF_like 166..247 CDD:238166 76/80 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 94 1.000 Domainoid score I7531
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 222 1.000 Inparanoid score I3553
Isobase 1 0.950 - 0.861654 Normalized mean entropy S1695
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004046
OrthoInspector 1 1.000 - - oto91580
orthoMCL 1 0.900 - - OOG6_103066
Panther 1 1.100 - - LDO PTHR48019
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R683
SonicParanoid 1 1.000 - - X3888
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1211.800

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