DRSC/TRiP Functional Genomics Resources

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Protein Alignment SRF and Mef2

DIOPT Version :10

Sequence 1:NP_003122.1 Gene:SRF / 6722 HGNCID:11291 Length:508 Species:Homo sapiens
Sequence 2:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster


Alignment Length:388 Identity:94/388 - (24%)
Similarity:155/388 - (39%) Gaps:100/388 - (25%)


- Green bases have known domain annotations that are detailed below.


Human   142 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMI 206
            ||.||::..|.::..|..||:|||.|:||||||||.|...::.|::.|.:..:|.:|:..:..::
  Fly     2 GRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVL 66

Human   207 ----------TSETGKALIQ----TCLNSPDSP-PRSDPTTDQRMSATGFEETDLTYQ------V 250
                      .|.|.|.:|:    ..:.||||| ..:|.|...|..|. :.:.|..:|      .
  Fly    67 LKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAK-YNKIDEEFQNMMQRNQ 130

Human   251 SESDSSGETKDTLKPAFTV---TNLPGT--TSTIQTAPSTSTTMQVSSGPSFPITNYLAPVSASV 310
            .....:|..:.....::|:   ..:||:  .:.:|.:|..|.| .:|..||...|:       ||
  Fly   131 MAIGGAGAPRQLPNSSYTLPVSVPVPGSYGDNLLQASPQMSHT-NISPRPSSSETD-------SV 187

Human   311 SPSAVSSANGTVLKSTGSGPVSSGGLMQLPTSFTLMPGGAVAQQVPVQAIQVHQAPQQASPSRDS 375
            .||      |::|:.:...|.|...|:..|:     ||       |...|..|.:.:|.||...:
  Fly   188 YPS------GSMLEMSNGYPHSHSPLVGSPS-----PG-------PSPGIAHHLSIKQQSPGSQN 234

Human   376 STDLTQTSSSGTVTLPATIMTSSVPTTVGGHMMYPSPHAVMYAPTSGLGDGSLTVLNAFSQAPST 440
            .     .:|:..|.:|.||  :.:|..:.      :|..|.||                      
  Fly   235 G-----RASNLRVVIPPTI--APIPPNMS------APDDVGYA---------------------- 264

Human   441 MQVSHSQVQEPGGVPQVFLTASSGTVQIPVSAVQLHQMAVIGQQAGSSSNLTELQVVNLDTAH 503
               ...|.|.....|.|       |:|.|:.|:..:...  .|...||..:....:::|:|.|
  Fly   265 ---DQRQSQTSLNTPVV-------TLQTPIPALTSYSFG--AQDFSSSGVMNSADIMSLNTWH 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SRFNP_003122.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..97
MADS_SRF_like 142..223 CDD:238166 30/94 (32%)
Involved in dimerization 168..222 17/67 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..240 9/21 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 362..385 4/22 (18%)
Mef2NP_001260842.1 ARG80 1..>203 CDD:227400 59/215 (27%)
MADS_MEF2_like 2..78 CDD:238165 25/75 (33%)
Blue background indicates that the domain is not in the aligned region.

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