DRSC/TRiP Functional Genomics Resources

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Protein Alignment SREBF2 and sre1

DIOPT Version :10

Sequence 1:NP_004590.2 Gene:SREBF2 / 6721 HGNCID:11290 Length:1141 Species:Homo sapiens
Sequence 2:NP_595694.1 Gene:sre1 / 2540730 PomBaseID:SPBC19C2.09 Length:900 Species:Schizosaccharomyces pombe


Alignment Length:1031 Identity:202/1031 - (19%)
Similarity:333/1031 - (32%) Gaps:388/1031 - (37%)


- Green bases have known domain annotations that are detailed below.


Human    94 QVTLPSFSPSAASP--QAPTLQV--KVSPTSVPTTPRATPILQPRPQPQPQPQTQ---------- 144
            |.::||.|.|.|||  :.||...  ..||.||...|.::|:..........|..:          
pombe     2 QSSIPSVSVSVASPAMETPTKASPDSKSPNSVGAIPSSSPLASSTKASTSTPFVENCSNLLCDLA 66

Human   145 --LQQQTVMITPTFSTTPQTRIIQ----------QPLIYQNAATSFQVLQPQVQSLVTSSQV--- 194
              ::.....:|.| |.:|.:..:.          .|..:.|...|       ...|.||:.:   
pombe    67 SIVEDSPPTLTNT-SLSPHSFSLSDMESSMSNWLNPFAFDNTMNS-------APPLFTSTNMGSP 123

Human   195 ---------------QPVTIQQQVQT------------VQAQRVLTQTANGTLQTLAPATVQTVA 232
                           .|.:.|.:..|            :|.|..:..    ::.|:.|:|||...
pombe   124 NSLENSTNPLLSNCGSPNSFQNETFTGPSLNEFDADDKIQRQMKILH----SVDTIDPSTVQNYP 184

Human   233 APQVQQVPVLVQPQI-IKTDSLVL---TTLKTDGSPVMAAVQNPALTALTTPIQTAALQVPTLVG 293
            :..:.      .|:: :||:.::.   ||.|.:.|.....:...:..:.:.| :|.....|...|
pombe   185 SADMS------NPEVKLKTEEIITPMDTTCKPEPSAKKIKLSPSSEDSCSIP-ETLPFSAPKSRG 242

Human   294 SSGTILTTMPVMMGQEKVPIKQVPGGVKQLEPPKEGERRTTHNIIEKRYRSSINDKIIELKDLVM 358
            |          :...|.......|||     .||    :|.||:||||||:::||:|.||:|.|.
pombe   243 S----------LSPSETPDFVAGPGG-----KPK----KTAHNMIEKRYRTNLNDRICELRDAVP 288

Human   359 GTDA----------------------KMHKSGVLRKAIDYIKYLQQVNHKLRQENMVL--KLANQ 399
            ...|                      |::|..:|.||.:||::|:..|.:|::.|..|  :||..
pombe   289 SLRAAAALRCGNSLDDEDLGGLTPARKLNKGTILAKATEYIRHLEAKNKELQKTNKQLSDRLAFY 353

Human   400 KNKLLKGIDLGSLVDNEVDLKIEDFNQNVLLMSPPASD-----SGSQAGFSPYSI--DSEPG--- 454
            ::.                           .|:||::|     |.:....|.||:  .|.|.   
pombe   354 EDP---------------------------SMAPPSNDTRAVNSVNVVSSSDYSVHQSSRPNLTQ 391

Human   455 ----SPLLDDAKVKDEPDSPPVALGMV-----DRSRI---LLCVLTFLCLSF--NPLTSLLQWGG 505
                ||.|:  .:.....:..|.||:.     |.|:.   |..:..||...|  ..|.::|:.|.
pombe   392 RAFTSPTLN--TMGRTALNGMVGLGLFNYFGNDSSQSVYGLFALPPFLMSPFTGTVLFNMLKIGV 454

Human   506 A--------HDSDQHP-HSGSGRSVLSFESGSGGWFDWMMPTLLLW----------LVNGVIVLS 551
            .        ||:.... ..|..:|.:|..|.       |.|:.:|:          |.:....:|
pombe   455 VLLGLFYLLHDNSLFKGFKGEKKSKVSTRSS-------MSPSSILFRKTVFEKYCLLDHSTSTIS 512

Human   552 VFVKLLVHGEPVIRPHSRSSVTFWRHR-------------------------KQADLDLARGD-- 589
            :|..||:.       ..:|:..:..||                         |..|..|..||  
pombe   513 LFFGLLIF-------TLKSAYGYLTHRLSALYTSSENWVYSEQQLAEVRNMEKLLDAQLMGGDAK 570

Human   590 ---------FAAAAG---NLQTC--------LAVLGRALPTSRLDLACSLSWNVIRYSLQKLRLV 634
                     ||::..   :..||        |.....::|::.:....:..||            
pombe   571 VDRLRLLMVFASSFSLPPSSHTCALQAMYCQLIFSNTSVPSAIVSKCVAFFWN------------ 623

Human   635 RWLLKKVFQCRRATPATEAGFEDEAKTSARDAALAYHRLHQL-HITGKLPAGSACSDV---HMAL 695
                              |..:..:|:|      .:..|.:| ..|..|...|...||   :|..
pombe   624 ------------------AAKKQHSKSS------VHAELRELPECTANLIENSHADDVFSPNMVE 664

Human   696 CAVNLAECAEEKIPPSTLVEIHLTAAMGLKTRCGGKLGFLASYF------------LSRAQ---- 744
            ....||:|..:....|..:...|:..:.|     ..|..|||::            |||..    
pombe   665 RLWVLAKCTRDSAQMSDSIISSLSDVLVL-----SPLEVLASWYAADLLDALLMESLSRKVEISE 724

Human   745 -----SLCGPEHSAVPDSLRWLCHPLGQKFFMERSWSVKSAAKESLYCAQRNPADPIAQVHQAFC 804
                 ||| |::|::                      ::.|....|.....|.||.:.:|..|: 
pombe   725 IEEIISLC-PKNSSI----------------------IRHALLAKLVLFPENTADSLNEVLAAY- 765

Human   805 KNLLERAIESLVKPQAKKKAGDQEEESCEFSSALEYLKLLHSFVDSVGVMSPPLSRSSVLKSALG 869
            ||.|:...:            |:.::|......|..|..|||      .:|..|.|       ||
pombe   766 KNTLDLCSQ------------DKRKQSSVLKINLSKLFTLHS------CLSLALQR-------LG 805

Human   870 -PDIICRWW-----------TSAITVAISWLQGDDAAVRSHFTKVERIPKALEVTE 913
             .|:..|.:           .:.::..|||      ...:.|..:...||..:|.|
pombe   806 YGDVSKRMYQEIFVPDSDADITPLSFIISW------TALNTFAPICTSPKENDVVE 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SREBF2NP_004590.2 Transcriptional activation (acidic). /evidence=ECO:0000269|PubMed:35120642 1..50
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..144 17/53 (32%)
Interaction with LMNA. /evidence=ECO:0000250|UniProtKB:Q3U1N2 237..491 69/303 (23%)
bHLHzip_SREBP2 326..402 CDD:381492 33/99 (33%)
Leucine-zipper 380..401 7/22 (32%)
sre1NP_595694.1 bHLHzip_scHMS1_like 259..354 CDD:381405 33/98 (34%)
DUF2014 516..766 CDD:430604 54/321 (17%)
Blue background indicates that the domain is not in the aligned region.

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