DRSC/TRiP Functional Genomics Resources

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Protein Alignment SOX2 and Sox21a

DIOPT Version :10

Sequence 1:NP_003097.1 Gene:SOX2 / 6657 HGNCID:11195 Length:317 Species:Homo sapiens
Sequence 2:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster


Alignment Length:339 Identity:134/339 - (39%)
Similarity:160/339 - (47%) Gaps:86/339 - (25%)


- Green bases have known domain annotations that are detailed below.


Human     7 TELKPPGPQQTSGGGGGNSTAAAA-----GGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKM 66
            |.:.|...|.|...|..:..|..:     .|:..||.|.:||||||||||||||||||||:||||
  Fly    82 TPVAPKMHQHTHHHGNSHHNAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKM 146

Human    67 HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGL 131
            ||||||||||||||||:|.:|||||||||||||||||||||||||||||.|||   :|..:||| 
  Fly   147 HNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKTL---NKSPVPGG- 207

Human   132 LAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNG-WSNGSYSMMQDQL----------------- 178
                     .|.|.|.|...|||......:..:| .|.||...||.||                 
  Fly   208 ---------GGGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSPLGQSLPHLHGHPHQS 263

Human   179 ---GYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSP-TYSMSYSQQGTPGMA--- 236
               .:|.||  :.|      |.|      :|..:.|.|..|..||| ..|:.......||:|   
  Fly   264 PYQSHPHHP--HPH------PHH------VQLAAATLSAKYGFGSPLELSLPRLPNAFPGLAHYP 314

Human   237 ------------LGSM--GSV---------VKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYL 278
                        |.:|  ||:         :..|...|||..:.:..|...|...:...      
  Fly   315 LDPTLALDLQARLQAMYAGSIYHPWRYLPLISPETPPSPPSSSGTGISSYGCVKSEKSS------ 373

Human   279 PGAEVPEPAAPSRL 292
            |.|.|...|:|..:
  Fly   374 PNAVVASAASPPNI 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SOX2NP_003097.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..43 10/40 (25%)
HMG-box_SoxB 39..118 CDD:438790 71/78 (91%)
SOXp 110..200 CDD:463537 34/110 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 243..266 5/31 (16%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P41225 272..280 0/7 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 297..317
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 71/78 (91%)
Blue background indicates that the domain is not in the aligned region.

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