DRSC/TRiP Functional Genomics Resources

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Protein Alignment SOD1 and Ccs

DIOPT Version :10

Sequence 1:NP_000445.1 Gene:SOD1 / 6647 HGNCID:11179 Length:154 Species:Homo sapiens
Sequence 2:NP_001163108.1 Gene:Ccs / 46035 FlyBaseID:FBgn0010531 Length:264 Species:Drosophila melanogaster


Alignment Length:154 Identity:34/154 - (22%)
Similarity:54/154 - (35%) Gaps:53/154 - (34%)


- Green bases have known domain annotations that are detailed below.


Human   848 LLPSSSGASQVPFPSPSL-PTSSPLPFSPSYPQVPLHPASLPTCPSPPPLPSTTAAPLLSLASAF 911
            ||..:||  |:..|:.:: ||::.:        .|......||..:..|..:||.||        
  Fly    14 LLAVTSG--QIDPPTTTVAPTTTTV--------APTTTTVAPTTTTVAPTTTTTVAP-------- 60

Human   912 SLAVMTVAQSLLSPSPGLLSQSPPAPPGPLPSMPLPLASCDQESLSAQTAETENEASRNPAQPLL 976
             ....|||       ||..:.:..| |||:.:                |..|:.....:..|   
  Fly    61 -TTTTTVA-------PGQTTTTTVA-PGPVTT----------------TGSTDTTTPSSAPQ--- 97

Human   977 GDARLAPISEEGKPQLVGRFQVTS 1000
             |.:.|.:     |.|:|.:...|
  Fly    98 -DVKAALV-----PVLLGAYVAMS 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SOD1NP_000445.1 Cu-Zn_Superoxide_Dismutase 3..147 CDD:238186
CcsNP_001163108.1 Sod_Cu 90..226 CDD:459663 7/35 (20%)
Blue background indicates that the domain is not in the aligned region.

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