DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lsamp and DIP-delta

DIOPT Version :9

Sequence 1:NP_001034921.1 Gene:lsamp / 664692 ZFINID:ZDB-GENE-090108-1 Length:333 Species:Danio rerio
Sequence 2:NP_001097508.2 Gene:DIP-delta / 5740816 FlyBaseID:FBgn0085420 Length:469 Species:Drosophila melanogaster


Alignment Length:289 Identity:80/289 - (27%)
Similarity:118/289 - (40%) Gaps:27/289 - (9%)


- Green bases have known domain annotations that are detailed below.


Zfish    36 NITIRQGDTTVIRCYVDDKVS-KVAW--LNRSNIIFAGEDKWSLDPRVELVTQGQLEYSLRIQKV 97
            |:|:..|....:.|.|:.... ||||  ::|..|:.......|..||.. :|.....:.|.:.:.
  Fly    52 NVTVAVGRDANLPCVVEHLGGYKVAWIHIDRQMILTIHRHVISRIPRYS-ITYTDNTWLLHVNQA 115

Zfish    98 DVFDEGPYTCSIQTKQQSKTSQV-YLIVQVPAIIYKVS---EDITVNEGSNVALTCLANGRPDPA 158
            ...|.|.|.|.:.|...  .||| ||.|.||..|..:.   ..:.|.|..|:.:||.|:|.|.|.
  Fly   116 HQDDRGYYMCQVNTNPM--ISQVGYLQVVV
PPNILDIESTPSSVAVRENQNINMTCRADGFPAPK 178

Zfish   159 ITWRLLNPSAEALDV----------GEYLEISGVVRSQAGRYECKASNDVSTPDVKYVNVVVNYP 213
            |.||  ....|.:.|          .:.|.::.|.|::.|.|.|.|:|.|.....|.:.:.|.:.
  Fly   179 IIWR--REDGEEIAVEKKKKVLVYDADVLPLTKVSRNEMGAYLCIATNGVPPSVSKRIILDV
EFS 241

Zfish   214 PYIKDVRSSETAVGQAGV-LHCEASAVPQPEFEW-YRDERRLSSSQSLTIQVSGS---RTVLVVA 273
            |.|........|.....| :.|...|.|:....| |.....|.|.:..|.....|   ...|.:.
  Fly   242 PMIWVPNQLVGAPSGTDVTIDCHTEAHPKAIIYWVYNSVMVLPSKKYKTDYTENSYRAHMKLTIR 306

Zfish   274 NVTEEDYGNYTCVATNRLGVHNASVFLYK 302
            |:...|:|||.|::.|.||....|:.:|:
  Fly   307 NLQYGDFGNYRCISKNSLGETEGSIRVYE 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lsampNP_001034921.1 Ig 34..124 CDD:299845 26/91 (29%)
IG_like 36..124 CDD:214653 26/91 (29%)
IG_like 134..197 CDD:214653 21/75 (28%)
IGc2 141..199 CDD:197706 21/67 (31%)
I-set 213..300 CDD:254352 24/91 (26%)
Ig 231..298 CDD:143165 20/71 (28%)
DIP-deltaNP_001097508.2 IG 51..143 CDD:214652 27/93 (29%)
Ig 145..238 CDD:416386 25/94 (27%)
Ig strand A 145..149 CDD:409353 1/3 (33%)
Ig strand A' 154..159 CDD:409353 0/4 (0%)
Ig strand B 165..172 CDD:409353 2/6 (33%)
Ig strand C 178..183 CDD:409353 3/6 (50%)
Ig strand C' 185..187 CDD:409353 0/1 (0%)
Ig strand D 195..199 CDD:409353 0/3 (0%)
Ig strand E 203..209 CDD:409353 1/5 (20%)
Ig strand F 216..223 CDD:409353 3/6 (50%)
Ig strand G 230..238 CDD:409353 1/7 (14%)
Ig 242..333 CDD:416386 24/90 (27%)
Ig strand A' 250..253 CDD:409353 0/2 (0%)
Ig strand B 259..266 CDD:409353 2/6 (33%)
Ig strand C 272..277 CDD:409353 1/4 (25%)
Ig strand C' 281..283 CDD:409353 0/1 (0%)
Ig strand D 289..293 CDD:409353 1/3 (33%)
Ig strand E 295..305 CDD:409353 2/9 (22%)
Ig strand F 314..322 CDD:409353 4/7 (57%)
Ig strand G 325..334 CDD:409353 2/8 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.