DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SNX1 and Snx1

DIOPT Version :9

Sequence 1:NP_001229862.1 Gene:SNX1 / 6642 HGNCID:11172 Length:557 Species:Homo sapiens
Sequence 2:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster


Alignment Length:458 Identity:195/458 - (42%)
Similarity:294/458 - (64%) Gaps:27/458 - (5%)


- Green bases have known domain annotations that are detailed below.


Human    57 QSPKITTSL--LPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKVLAKTLISLPPQ 119
            :||:.|...  :.||||: ..|..:|:::.|      |...::||   .|:..:....|      
  Fly     4 ESPEHTRDFAEVDINNGA-ATGSEDEEEEVP------APGSVTLD---RNESDLFVSAL------ 52

Human   120 EATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVK 184
            ..::.....|..|.|.::  .|.| :::.::||:||||||.:|:||||||:|::|.|:..:|:..
  Fly    53 SPSSIGDIHPLQEVLTDD--GDYF-ISIVVSDPQKIGDGMGSYLAYKVTTKTNIPKFKRSEFSTL 114

Human   185 RRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSS-----SAEFLEKRRAALER 244
            ||||||||:::.|..|:.:.|.|:||.|.|::||.||||:..:.|.     :.|::|.|||||||
  Fly   115 RRFSDFLGIHDLLVGKYMRLGRIIPPAPSKNIIGSTKVKISPQQSEPGTPMTQEWVEIRRAALER 179

Human   245 YLQRIVNHPTMLQDPDVREFLEK-EELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIW 308
            ::.|...||.:..|.|...|||. :||||:|.|..|||||::::|||..:.|:|:|.||:|:|.|
  Fly   180 FVHRTAQHPVLRVDLDFMNFLESDQELPRSVNTSALSGAGVIRLFNKVGETVNKITYKMDENDPW 244

Human   309 FEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEV 373
            |::|:.|||..:..|:|||..:::||..|:||:|.|...|||.|||.:.|::|.||||||.||:|
  Fly   245 FDDKITEVESLDANLQKLHNAMKSLVTSRRELSLLTGLVAKSAAMLSTCEEHTGLSRALSNLADV 309

Human   374 EEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLL 438
            |||||.|..||||:|||:|||.:.||:.|...::..|.:|:|.:|.||.||..|.|:||...|..
  Fly   310 EEKIELLRSEQANSDFFILAEFIKDYLGLFGAIKCIFHERVKAFQNWQYAQMQLSKRRENRGRFE 374

Human   439 WANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS 503
            .||:.|||.||:.|:.||:.:|.:.::.|:.||..:::|:.|||..:.||||.::|||:|..:..
  Fly   375 LANRADKLDQAQQEVDEWQGKVQRCQQQFDDISAEIKREMERFELTRVKDFKVNIIKYIEDQMAH 439

Human   504 QQQ 506
            |||
  Fly   440 QQQ 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNX1NP_001229862.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..84 9/28 (32%)
Sorting_nexin 55..130 CDD:281663 15/74 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 115..142 3/26 (12%)
PX_SNX1 145..268 CDD:132814 59/128 (46%)
Membrane-binding amphipathic helix. /evidence=ECO:0000303|PubMed:19816406 281..298 7/16 (44%)
BAR 286..506 CDD:299863 103/219 (47%)
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 59/127 (46%)
BAR_SNX1_2 232..455 CDD:153307 101/211 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 237 1.000 Domainoid score I2326
eggNOG 1 0.900 - - E1_COG5391
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 406 1.000 Inparanoid score I1902
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53591
OrthoDB 1 1.010 - - D299625at33208
OrthoFinder 1 1.000 - - FOG0001310
OrthoInspector 1 1.000 - - otm42219
orthoMCL 1 0.900 - - OOG6_102065
Panther 1 1.100 - - O PTHR10555
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1659
SonicParanoid 1 1.000 - - X1340
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.870

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