DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SNTA1 and stn-1

DIOPT Version :10

Sequence 1:NP_003089.1 Gene:SNTA1 / 6640 HGNCID:11167 Length:505 Species:Homo sapiens
Sequence 2:NP_492521.1 Gene:stn-1 / 266844 WormBaseID:WBGene00006062 Length:440 Species:Caenorhabditis elegans


Alignment Length:506 Identity:173/506 - (34%)
Similarity:255/506 - (50%) Gaps:75/506 - (14%)


- Green bases have known domain annotations that are detailed below.


Human     7 APRTGLLELRAGAGSGAGGERWQRVLLSLAEDVLTVSPADGDPGPEPGAPREQEPAQLNGAAEPG 71
            |.|:||:::....       :|.|||.:|....:|:.            ..||..|:        
 Worm     3 AVRSGLVDIFVQG-------QWHRVLATLDPTAITLQ------------TMEQNEAE-------- 40

Human    72 AGPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAIL 136
                       .::|.|.|.|.|..||||||||||:|.|||:|||||||:||||...||:.|.|:
 Worm    41 -----------AEKRTVRVVKYDGNGLGISIKGGRDNNMPIVISKIFKGMAADQAGELFLDDVII 94

Human   137 SVNGEDLSSATHDEAVQVLKKTGKEVVLEVKYMKDVSPYFKNSTGGTSVGWDSPPASPLQRQPSS 201
            |||||:|..|:|:|||:.||:.|:.|.|:|:|.::...:.:|..  .:|.||....         
 Worm    95 SVNGENLLDASHEEAVRALKRAGRVVDLQVQYRREDMMHRENIV--ENVEWDDDIR--------- 148

Human   202 PGPTPRNFSEAKHMSLKMAYVSKRCTPNDPEPRYLEICSADGQDTLFLRAKDEASARSWATAIQA 266
                    ...:.:.||:|||::.....|.|.|.||:.|..|:.:|.:|......|..|..|:.|
 Worm   149 --------ERVRTIGLKLAYVARAGIDADAEGRILEMRSPSGRYSLAMRCSSSEEADGWFEALHA 205

Human   267 QVNTLTPRVKDELQALLAATSTAGSQDIKQIGWLTEQLPSGGTA---PTLALLTEKELLLYLSLP 328
            ....|..:...::..:|     ..:..::.:||:.||:...|.:   |....||..|:|.|.::|
 Worm   206 CTTCLLTQALAQVNIML-----GNNPQVRHMGWIAEQVSENGISMWKPKFMTLTNSEILFYEAVP 265

Human   329 ETREALSRPARTAPLIATRLVHSGPSKGSVPYDAEL----SFALRTGTRHGVDTHLFSVESPQEL 389
            :.:...:.|....||:|||:|.:  |..:.|....|    ||.:||||:.||.||...||:..||
 Worm   266 QLKAEWAEPRLVRPLVATRVVQT--SSRTAPVIKGLTDVISFRMRTGTQQGVRTHTIRVETHAEL 328

Human   390 AAWTRQLVDGCHRAAEGVQEVSTACTWNGRPCSLSVHIDKGFTLWAAEPGAARAVLLRQPFEKLQ 454
            |.|.|.:|.|.:.|.....:||..|.|.|..|.|.|::|.|.:|.:    :...||.:..||.::
 Worm   329 ARWVRAVVIGGYEACLSTSQVSAPCLWRGESCELIVNLDNGISLLS----STGEVLWQHSFETIR 389

Human   455 MSSDDGASLLFLDFGGAEGEIQLDLHSCPKTIVFIIHSFLSAKVTRLGLLA 505
            .:.|||...|::|||...||.:|||.:..|.:|||:||||:.||.||||.|
 Worm   390 ATGDDGGRFLWVDFGPPHGEQELDLLNSAKPVVFILHSFLATKVYRLGLYA 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNTA1NP_003089.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25 4/17 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 40..77 4/36 (11%)
PDZ_syntrophin-like 86..168 CDD:467262 51/81 (63%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 180..210 3/29 (10%)
PHsplit_syntrophin <209..270 CDD:269960 18/60 (30%)
PH 298..401 CDD:459697 41/109 (38%)
Calmodulin-binding. /evidence=ECO:0000250 483..505 14/21 (67%)
stn-1NP_492521.1 PDZ_syntrophin-like 44..126 CDD:467262 51/81 (63%)
PH-like <152..208 CDD:473070 18/55 (33%)
PH 228..334 CDD:459697 38/107 (36%)

Return to query results.
Submit another query.