DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNRPB and SmD1

DIOPT Version :9

Sequence 1:NP_937859.1 Gene:SNRPB / 6628 HGNCID:11153 Length:240 Species:Homo sapiens
Sequence 2:NP_524774.1 Gene:SmD1 / 44668 FlyBaseID:FBgn0261933 Length:124 Species:Drosophila melanogaster


Alignment Length:110 Identity:28/110 - (25%)
Similarity:41/110 - (37%) Gaps:27/110 - (24%)


- Green bases have known domain annotations that are detailed below.


Human    21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV-LGLVLLRGEN-------- 76
            |::|....||....|..||..|           |:.:...:....| |..:.:||.|        
  Fly    19 LKNGTQIHGTITGVDVAMNTHL-----------KSVRMTIKNRDPVHLETLSIRGNNIRYFILPD 72

Human    77 ---LVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAA-GRGIPAG 117
               |.::.::..|...|   :...:|..|..|.||.| |||.|.|
  Fly    73 SLPLETLLIDDTPKSKT---KKKDSGRVGNRGRGRGARGRGGPRG 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNRPBNP_937859.1 Sm_B 5..83 CDD:212464 15/73 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..240
Repeat-rich region 175..236
SmD1NP_524774.1 Sm_D1 2..93 CDD:212471 17/87 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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