DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNRPA1 and Snrpa1

DIOPT Version :10

Sequence 1:NP_003081.2 Gene:SNRPA1 / 6627 HGNCID:11152 Length:255 Species:Homo sapiens
Sequence 2:NP_067311.4 Gene:Snrpa1 / 68981 MGIID:1916231 Length:255 Species:Mus musculus


Alignment Length:255 Identity:250/255 - (98%)
Similarity:254/255 - (99%) Gaps:0/255 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 65

Human    66 LKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKH 130
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse    66 LKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKH 130

Human   131 YRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKTFNPGAGLPTDKKKGG 195
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse   131 YRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKTFNPGAGLPTDKKKGG 195

Human   196 PSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTDDGEEEMEEDTVTNGS 255
            ||.||||||||||||||||||||||||||||||||||||||||:|:||||:|:|||||||
Mouse   196 PSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPSDEGEEEIEDDTVTNGS 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNRPA1NP_003081.2 LRR_9 1..175 CDD:405295 173/173 (100%)
LRR 1 20..41 20/20 (100%)
leucine-rich repeat 22..43 CDD:275378 20/20 (100%)
LRR 2 43..64 20/20 (100%)
leucine-rich repeat 44..65 CDD:275378 20/20 (100%)
LRR 3 65..86 20/20 (100%)
leucine-rich repeat 66..89 CDD:275378 22/22 (100%)
LRR 4 89..110 20/20 (100%)
leucine-rich repeat 90..114 CDD:275378 23/23 (100%)
leucine-rich repeat 115..127 CDD:275378 11/11 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 174..201 25/26 (96%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..255 28/32 (88%)
Snrpa1NP_067311.4 LRR_9 1..175 CDD:405295 173/173 (100%)
LRR 1 20..41 20/20 (100%)
leucine-rich repeat 22..43 CDD:275378 20/20 (100%)
LRR 2 43..64 20/20 (100%)
leucine-rich repeat 44..65 CDD:275378 20/20 (100%)
LRR 3 65..86 20/20 (100%)
leucine-rich repeat 66..89 CDD:275378 22/22 (100%)
LRR 4 89..110 20/20 (100%)
leucine-rich repeat 90..114 CDD:275378 23/23 (100%)
leucine-rich repeat 115..127 CDD:275378 11/11 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 179..199 19/19 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..255 28/32 (88%)

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