DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNRPA1 and snrpa1

DIOPT Version :10

Sequence 1:NP_003081.2 Gene:SNRPA1 / 6627 HGNCID:11152 Length:255 Species:Homo sapiens
Sequence 2:XP_002939312.2 Gene:snrpa1 / 100486145 XenbaseID:XB-GENE-1007226 Length:255 Species:Xenopus tropicalis


Alignment Length:255 Identity:209/255 - (81%)
Similarity:232/255 - (90%) Gaps:0/255 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 65
            ||||||:||||||||||||||||||||||||||||||||||||||.||.||||||||||||||:|
 Frog     1 MVKLTADLIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDTIDCSDNEIRKLDGFPLLKR 65

Human    66 LKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKH 130
            |||||:|||||||||||::.|||.||||||||||:.||||||.|:..|.|||:|:||||||||:|
 Frog    66 LKTLLLNNNRICRIGEGIEHALPNLTELILTNNSITELGDLDNLSPCKHLTYISLLRNPVTNKRH 130

Human   131 YRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKTFNPGAGLPTDKKKGG 195
            ||:|||||:||||||||:|||..||:||..|||||||||||||||:|||||.|||||||:|||.|
 Frog   131 YRMYVIYKIPQVRVLDFEKVKQSEREEAANMFKGKRGAQLAKDIAKRSKTFVPGAGLPTEKKKAG 195

Human   196 PSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTDDGEEEMEEDTVTNGS 255
            ||||||||||||||||:||||||||.||||||||||::.....:::.||||:||.|||||
 Frog   196 PSPGDVEAIKNAIANATTLAEVERLNGLLQSGQIPGKDHVLATSEEAEEEMDEDVVTNGS 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNRPA1NP_003081.2 LRR_9 1..175 CDD:405295 146/173 (84%)
LRR 1 20..41 20/20 (100%)
leucine-rich repeat 22..43 CDD:275378 20/20 (100%)
LRR 2 43..64 18/20 (90%)
leucine-rich repeat 44..65 CDD:275378 18/20 (90%)
LRR 3 65..86 17/20 (85%)
leucine-rich repeat 66..89 CDD:275378 18/22 (82%)
LRR 4 89..110 16/20 (80%)
leucine-rich repeat 90..114 CDD:275378 17/23 (74%)
leucine-rich repeat 115..127 CDD:275378 9/11 (82%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 174..201 22/26 (85%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..255 19/32 (59%)
snrpa1XP_002939312.2 LRR_9 1..175 CDD:405295 146/173 (84%)
leucine-rich repeat 46..65 CDD:275380 16/18 (89%)
leucine-rich repeat 90..114 CDD:275380 17/23 (74%)

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