Protein Alignment SNRPA and snrpa

DIOPT Version :9

• Sequence 1: NP_004587.1
• Gene: SNRPA / 6626
• HGNCID: 11151
• Length: 282
• Species: Homo sapiens
• Sequence 2: NP_001016784.1
• Gene: snrpa / 549538
• XenbaseID: XB-GENE-494246
• Length: 282
• Species: Xenopus tropicalis
• Alignment Length: 286
• Identity: 236/286 - (82%)
• Similarity: 251/286 - (87%)
• Gaps: 8/286 - (2%)

Human     1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSA 65
            |||.|.|||:|||||||||||||||||||||||||||||||||||||||||||||||||||:|||
 Frog     1 MAVQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSA 65

Human    66 TNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR-EKRKPKSQETPATKKAVQGGG 129
            |||||||||||||||||||||:|:|||||||||||:||||||| ||||.|.||.|..|||:.|..
 Frog    66 TNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTYVERDRKRQEKRKVKGQEAPGVKKALPGAA 130

Human   130 ATPVVGAVQGPVPGM---PPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
            ..|   .|.|.:.||   |.||||||:| ||.||.|||..|||:||||:||||||||.||...||
 Frog   131 LLP---GVPGQMAGMQNIPGMTQAPRMM-HMAGQAPYMHHPGMMPPPGMAPGQIPPGGMPHGHLM 191

Human   192 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQ 256
            ||||.|.||:|||||||||||||||||||||||||||||||||||||||||||||||||||||||
 Frog   192 PGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQ 256

Human   257 AGAARDALQGFKITQNNAMKISFAKK 282
            |||||::||||||||:|:||||||||
 Frog   257 AGAARESLQGFKITQSNSMKISFAKK 282

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SNRPA	NP_004587.1	RRM1_U1A	7..95	CDD:409906	83/87 (95%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	100..132		20/32 (63%)
		RRM2_U1A	197..282	CDD:409908	78/84 (93%)
snrpa	NP_001016784.1	RRM1_U1A	7..95	CDD:240921	83/87 (95%)
		PABP-1234	<10..205	CDD:130689	154/198 (78%)
		RRM2_U1A	203..282	CDD:240924	74/78 (95%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	173	1.000	Domainoid score	I18311
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H3380
Inparanoid	1	1.050	461	1.000	Inparanoid score	I8246
NCBI	1	1.000	-	-
OMA	1	1.010	-	-		QHG54412
OrthoDB	1	1.010	-	-		D1608132at2759
OrthoFinder	1	1.000	-	-		FOG0001375
OrthoInspector	1	1.000	-	-		oto152067
Panther	1	1.100	-	-	LDO	PTHR10501
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X1105
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	12	12.080