DRSC/TRiP Functional Genomics Resources

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Protein Alignment SMARCB1 and snf5

DIOPT Version :10

Sequence 1:NP_001349806.1 Gene:SMARCB1 / 6598 HGNCID:11103 Length:403 Species:Homo sapiens
Sequence 2:NP_592979.2 Gene:snf5 / 2541801 PomBaseID:SPAC2F7.08C Length:598 Species:Schizosaccharomyces pombe


Alignment Length:248 Identity:85/248 - (34%)
Similarity:133/248 - (53%) Gaps:53/248 - (21%)


- Green bases have known domain annotations that are detailed below.


Human   201 PEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLD--LNPLTFVPAIASAIRQQI 263
            |..||||||:::.|..||||:||||:.:|.::.:.|:|.:|.|.|  |:.:..|..|:.:|:.||
pombe   104 PVDLVPIRLEIDADRYKLRDSFTWNLYDKCISLDQFAEQICIDYDIPLHNVHIVQNISKSIQAQI 168

Human   264 ESY---------------------------PTDSILED--------QSDQRVIIKLNIHVGNISL 293
            ..|                           |:||:.:.        |:|.|::|||:|.:|.::|
pombe   169 NDYEPRKAQSNLSFVSDVSSSTSETVYAHEPSDSLAKASKQQIPTVQNDLRILIKLDITIGRLNL 233

Human   294 VDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQK-----TYAFSENPLPT 353
            :|||||::...|:|.|:||..:|.:|||.|||.|.:|:|||.|...:.|     .|.|..:.:..
pombe   234 IDQFEWNLFAPESSAEEFATVMCLDLGLSGEFCTAVAHSIREQCQMYIKYLSLIGYLFDGSEIED 298

Human   354 VEI------AIRNT-----GDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 395
            .|:      .::||     .::..:.|::..|.|||||::.|..||..|||||
pombe   299 EEVRSYILPPLKNTLRFSDMESSSFAPMIYELNDAEMERQDRGYDREARRMRR 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMARCB1NP_001349806.1 WH_NTD_SMARCB1 9..107 CDD:411036
SNF5 199..381 CDD:428158 76/232 (33%)
snf5NP_592979.2 SNF5 103..338 CDD:428158 77/233 (33%)
Blue background indicates that the domain is not in the aligned region.

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