DRSC/TRiP Functional Genomics Resources

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Protein Alignment SMARCA4 and swsn-4

DIOPT Version :10

Sequence 1:NP_001122321.1 Gene:SMARCA4 / 6597 HGNCID:11100 Length:1679 Species:Homo sapiens
Sequence 2:NP_502082.1 Gene:swsn-4 / 178015 WormBaseID:WBGene00004204 Length:1474 Species:Caenorhabditis elegans


Alignment Length:1769 Identity:749/1769 - (42%)
Similarity:979/1769 - (55%) Gaps:457/1769 - (25%)


- Green bases have known domain annotations that are detailed below.


Human    49 PPSAGHPIPTQ-GPGGYPQD-NMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPS 111
            |..||..:..| |.|...|: .:.::...:.||.|:|:.:|.|                      
 Worm    15 PQPAGEVVAQQAGDGAQGQELTISKLENAITSMEEQGLQNDHR---------------------- 57

Human   112 PMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG-PGGAPLDGADPQALGQQNRGPTPFNQN 175
                             ||.:.:...      ::.|| |...|         ||:|.|.......
 Worm    58 -----------------HAKAVLLKQ------KLQSGLPDAVP---------GQENGGNQQITPA 90

Human   176 QLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
            ||:|||||:.||::|||.:.:|.:|.......||      ::.||.                   
 Worm    91 QLNQLRAQVSAYRLLARNEQVPANLIADAVMLRP------KVTTLL------------------- 130

Human   241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPP 305
               |.|..|                       ||:...|...|:....:.|              
 Worm   131 ---PEPYEY-----------------------PGEAENGEKLPYDLMKIFN-------------- 155

Human   306 QPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQ-KQSRITPIQKPRGLDPVEILQE 369
                                                   ||| :.:|.|.|..|.|:|||.:|::
 Worm   156 ---------------------------------------LHQIRCNRPTTISVPSGIDPVGMLKQ 181

Human   370 REYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTALETAL 434
            ||..:|.||..|::.|.|||..:...::.||.|||:||||:|.|.|:|.||:.|::|||.|||||
 Worm   182 RENMIQNRIGLRMKLLNNLPADIPDHMKLKAEIELRALRLVNLQTQVRSEVMACLKRDTTLETAL 246

Human   435 NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQK 499
            |..||:|:|||||||||:|||||||||:||||||||||.:.:.:|:||.|:||||||:...|:.|
 Worm   247 NPYAYRRTKRQSLREARVTEKLEKQQKMEQERKRRQKHTDLMQAIIQHGKEFKEYHRNNLLKMAK 311

Human   500 LTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANL 564
            ..|||.|||.|.|||:||:..|.||.||::||.|||||||.|:|:|||:||.||||||||||.:|
 Worm   312 SRKAVMTYHQNNERERKKDEIRNEKLRMQKLMQEDEEGYRALLDEKKDQRLVYLLQQTDEYVDSL 376

Human   565 TELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHV---ESGK 626
            ..|||||:..    ||||||:.||.|.           |..:||.::        :||   .:||
 Worm   377 CSLVRQHQNT----EKKKKKEDKKIEK-----------GNQMDEEAR--------VHVRERSTGK 418

Human   627 ILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIP 691
            .|||..|||..::|.|||.:|.||:.||    :..|::|||||||          .|||     |
 Worm   419 ALTGDQAPKTEEIEFWLETHPEYEIVPR----DQLSDDEEEEEEE----------APVE-----P 464

Human   692 DPDSDDV-----SEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVN 751
            :.:.||.     .|..|:.|:|.|:.: :|||  .|...:.:..|||.||.:.|:|.||...|..
 Worm   465 EEEKDDQYAGMDEETKAKMILEKARNE-EDEY--DQKTKKQMADYYATAHKIKEKVVKQHTTMGG 526

Human   752 G----VLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPL 812
            |    :||.||||||||:|||||||||||||||||||||||||:|:|||||.|:.|||:|:||||
 Worm   527 GDPNLLLKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLVTYLMEVKQNNGPYLVIVPL 591

Human   813 STLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKY 877
            ||||||..||.||||||..:.|||:..|||....|:|.|.||||:|||||:||:|.:|.||||||
 Worm   592 STLSNWQNEFAKWAPSVTTIIYKGTKDARRRVEGQIRKGAFNVLMTTYEYVIKEKALLGKIRWKY 656

Human   878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
            ||:|||||:|||:||||.:||..:.|..|||||||||||||||||||||||||:||.||.|||||
 Worm   657 MIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPELWALLNFLLPSIFSSCGTFEQW 721

Human   943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVL 1007
            ||||||.|||||:||:|||:|||||||||||||||||||||||:|||:|.|||||||.||||:|:
 Worm   722 FNAPFATTGEKVELNQEETMLIIRRLHKVLRPFLLRRLKKEVESQLPDKTEYVIKCDQSALQKVI 786

Human  1008 YRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQG 1072
            ||||| ||:||      |.|...|.::||||::.|||:||||::|.:||:|...:  :....|.|
 Worm   787 YRHMQ-KGLLL------DAKMSSGARSLMNTVVHLRKLCNHPFLFPNIEDSCRAY--WKVNEVNG 842

Human  1073 LDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
            .||.|.:||.||||||||||:||.|::|:|.||||:|.|.||:..:|.:.||||||:||.::||.
 Worm   843 TDLMRVAGKLELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGD 907

Human  1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL 1202
            ||..||.|.|:.|:|:|||||||||||||:||||||||||||||||:|||||||||||:.|||||
 Worm   908 LLTQFNAPNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVL 972

Human  1203 RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSG 1267
            ||.|.|||||||||||:||||||:||||||.|||:|:..||:..|:.|::.:.::|         
 Worm   973 RLITANSVEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERKQMLEQIIQADGEEE--------- 1028

Human  1268 SASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPK 1332
                                    ||:|||||||||||:||.||||::|..||:|||||||....
 Worm  1029 ------------------------EEEEVPDDETVNQMVARSEEEFNIFQSMDIDRRREEANQLH 1069

Human  1333 RKPRLMEEDELPSWIIK---DDAEVERLTCEEEEEKMFGR---GSRHRKEVDY-SDSLTEKQWLK 1390
            |||||:||.|:|..|:|   |..|:||  ..||..::..:   ..|.|:|||| ||.|:::|::|
 Worm  1070 RKPRLLEEHEIPDDILKLSFDYEEMER--AREEGREVVDQTPNQRRRRREVDYSSDLLSDEQFMK 1132

Human  1391 KITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIEEE----VRQKKSSRKRKRDSDA 1451
            ::                                     ||:|:|    |.::|..||||.   |
 Worm  1133 QV-------------------------------------EEVEDENNQAVAERKKQRKRKM---A 1157

Human  1452 GSSTPTTSTRSRDKDDES-------KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSS 1509
            |          .|::|:|       .|:||           ..|.|.:|:.:::|.:::|| :..
 Worm  1158 G----------LDENDDSMDDVVLQHKKKK-----------TDPELAEKINEMLDVILEYK-NED 1200

Human  1510 GRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE 1574
            |..:::||..||:|||||:||::|.||:||.:|.::|...:|..:.:|..|:.||..||||:|.|
 Worm  1201 GELIADVFQTLPTRKELPDYYQVISKPMDFDRINKKIETGRYTVMEELNDDMNLLVNNAQTYNEE 1265

Human  1575 GSLIYEDSIV------------------------------------------------------- 1584
            ||.||..|..                                                       
 Worm  1266 GSEIYVSSETIGKLWKEQYDKFMNPPKPVEEPVKKKEPSTPSTSSSRPSTSGTPSVSDLQRTQQA 1330

Human  1585 -----------------------------------------LQSVFTSVR---------QKIEKE 1599
                                                     :||...:.|         :|.||:
 Worm  1331 TAQQMLMLMTHMQSLPPAQAQQFQQALMTQTGGNQALMLQYMQSAMLAQRAQASTKVTPKKDEKK 1395

Human  1600 DDSEGEESEEEEEGEEEGSESESRSVKVKIKLGR------KEKAQDRLKGGRRRPS---RGSRAK 1655
            :.|...::||.::.:|..:.|.|.....|.|...      :|..::.:.|.::.|:   |.||..
 Worm  1396 ETSSSVKTEEAKKDDEPSTSSASAPPPKKKKESEDSEDPMEEDEEEEIIGQKKEPASSRRKSRPT 1460

Human  1656 PVVSDDDSEEEQEE 1669
            ...|::|.|||.:|
 Worm  1461 RRFSNEDEEEEDDE 1474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMARCA4NP_001122321.1 DEGH box 881..884 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1254..1299 6/44 (14%)
SnAC 1322..1389 CDD:464219 34/73 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1432..1492 18/70 (26%)
Bromo_SNF2L2 1490..1596 CDD:99947 43/210 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1596..1679 22/83 (27%)
KIKL. /evidence=ECO:0000269|PubMed:29567837 1628..1631 1/2 (50%)
Necessary for interaction with SS18L1/CREST. /evidence=ECO:0000250 1..282 47/235 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..177 23/130 (18%)
Med15 42..>222 CDD:312941 41/175 (23%)
QLQ 171..205 CDD:462622 14/33 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 198..352 16/154 (10%)
Smc <364..>570 CDD:440809 126/205 (61%)
HSA 460..532 CDD:214727 42/71 (59%)
RNA-binding region which is sufficient for binding to lncRNA Evf2. /evidence=ECO:0000250|UniProtKB:Q3TKT4 462..728 125/273 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..610 12/32 (38%)
BRK 612..656 CDD:197800 19/46 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 647..699 19/56 (34%)
DEXHc_SMARCA4 731..981 CDD:350820 187/253 (74%)
PLN03142 750..>1232 CDD:215601 344/485 (71%)
Sufficient for interaction with DLX1. /evidence=ECO:0000250|UniProtKB:Q3TKT4 837..916 51/78 (65%)
swsn-4NP_502082.1 QLQ 88..116 CDD:462622 13/27 (48%)
HSA 272..344 CDD:214727 42/71 (59%)
BRK 403..446 CDD:462196 19/50 (38%)
PLN03142 472..1288 CDD:215601 490/924 (53%)

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