DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SLIT1 and slit1a

DIOPT Version :9

Sequence 1:NP_003052.2 Gene:SLIT1 / 6585 HGNCID:11085 Length:1534 Species:Homo sapiens
Sequence 2:NP_001030140.1 Gene:slit1a / 556123 ZFINID:ZDB-GENE-030722-3 Length:1524 Species:Danio rerio


Alignment Length:1516 Identity:1126/1516 - (74%)
Similarity:1286/1516 - (84%) Gaps:6/1516 - (0%)


- Green bases have known domain annotations that are detailed below.


Human    18 LWLLLWAAAWRLGASACPALCTCTGTTVDCHGTGLQAIPKNIPRNTERLELNGNNITRIHKNDFA 82
            :|:||...  :.| |.|||||||:||||||||.||:.||:|||||||||||||||:|||::|||.
Zfish    14 VWVLLLVC--KTG-SGCPALCTCSGTTVDCHGLGLKNIPRNIPRNTERLELNGNNLTRINRNDFT 75

Human    83 GLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLPELLFQNNQALSRLDLSENAIQA 147
            |||.|||||||||||..|||||||:|:|||||||||||||.|||||||.|.||||||||||.|||
Zfish    76 GLKYLRVLQLMENQIVTVERGAFDEMRELERLRLNRNQLHQLPELLFQKNAALSRLDLSENFIQA 140

Human   148 IPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITTIPVSSFNHMPKLRTFRL 212
            |||||||||||:||||||||.|||||:|||||:|||||||||||||::|||||||||||||||||
Zfish   141 IPRKAFRGATDIKNLQLDKNHISCIEDGAFRAMRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRL 205

Human   213 HSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLRGLNVAEVQKSEFSCSGQGEAGRVPTCTL 277
            |||:|.|||.|:|||||||:||.||||||||.||.|||||||||||.|||||||.::....:|:|
Zfish   206 HSNNLVCDCVLSWLSQWLRERPNIGLFTQCSSPAPLRGLNVAEVQKHEFSCSGQSDSAVGQSCSL 270

Human   278 SSGSCPAMCTCSNGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSN 342
            |||||||:|:|:|.||||||||.|.||::||::|||||||.|.||||||||||||:|||||||||
Zfish   271 SSGSCPAVCSCNNNIVDCRGKGPTLIPSSLPDSMTEIRLEQNSIKSIPPGAFSPYKKLRRIDLSN 335

Human   343 NQIAEIAPDAFQGLRSLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNL 407
            |||:|:|||||||||||||||||||||||||||||.||:.|||||||||||:|:|.:.|||||||
Zfish   336 NQISELAPDAFQGLRSLNSLVLYGNKITDLPRGVFDGLHALQLLLLNANKIHCLRANTFQDLQNL 400

Human   408 SLLSLYDNKIQSLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETSGARCASPRRL 472
            |||||||||||:||||||:||||||||||||||||||||||||||:||:||||||||||.|||||
Zfish   401 SLLSLYDNKIQTLAKGTFSSLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCTSPRRL 465

Human   473 ANKRIGQIKSKKFRCSAKEQYFIPGTEDYQLNSECNSDVVCPHKCRCEANVVECSSLKLTKIPER 537
            |||||||||||||||||||||.||||||.:||::||:|.|||.|||||:|||:||:|:|.:|||.
Zfish   466 ANKRIGQIKSKKFRCSAKEQYAIPGTEDSRLNNDCNNDPVCPAKCRCESNVVDCSNLRLDRIPEH 530

Human   538 IPQSTAELRLNNNEISILEATGMFKKLTHLKKINLSNNKVSEIEDGAFEGAASVSELHLTANQLE 602
            :|.||.|.|||||||:.:||.|.||.|||||||||||||:|||||||||||:||:|||||||||:
Zfish   531 VPASTTEPRLNNNEITTIEAMGAFKTLTHLKKINLSNNKISEIEDGAFEGASSVNELHLTANQLD 595

Human   603 SIRSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNQITTVSPGAFDTLQSLSTLN 667
            ...|||||||:|||.|||||||||||||:|||||.||||||||||.:||::||||||||||||||
Zfish   596 LAHSGMFRGLEGLRMLMLRNNRISCIHNNSFTGLHNVRLLSLYDNTLTTIAPGAFDTLQSLSTLN 660

Human   668 LLANPFNCNCQLAWLGGWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCEEGQEEGGCLPRP 732
            ||||||||||:||||..|||.||||||||||..|.||::|||||||.||||||:..|:..|.|..
Zfish   661 LLANPFNCNCRLAWLSSWLRNRKIVTGNPRCHRPAFLKEIPLQDVAAPDFRCEDDHEDVSCAPPV 725

Human   733 QCPQECACLDTVVRCSNKHLRALPKGIPKNVTELYLDGNQFTLVPGQLSTFKYLQLVDLSNNKIS 797
            .||.:|.||::|||||||||:|||||.|:|:|||||||||.:.||.:||:||.|||||||||:||
Zfish   726 HCPADCTCLESVVRCSNKHLQALPKGTPRNITELYLDGNQLSTVPKELSSFKSLQLVDLSNNRIS 790

Human   798 SLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDISTLQEGIFADVTSLSHLA 862
            ||:||||||||||||||||||||:|||.|||.||||||||||||||||.|.:|||:|..||||||
Zfish   791 SLTNSSFTNMSQLTTLILSYNALRCIPTLAFSGLRSLRLLSLHGNDISELPDGIFSDAQSLSHLA 855

Human   863 IGANPLYCDCHLRWLSSWVKTGYKEPGIARCAGPQDMEGKLLLTTPAKKFECQGPPTLAVQAKCD 927
            ||||||:|||.|||||.|||||||||||||||.|..||||||||||||:|||||....|:.|||:
Zfish   856 IGANPLHCDCGLRWLSDWVKTGYKEPGIARCASPHGMEGKLLLTTPAKRFECQGEVDSAILAKCN 920

Human   928 LCLSSPCQNQGTCHNDPLEVYRCACPSGYKGRDCEVSLDSCSSGPCENGGTCHAQEGEDAPFTCS 992
            .|.|.||.:||.|..|..:.|||.|..|:||::||..:::|.|.||:||||||....||..::||
Zfish   921 PCASGPCLHQGVCEADQTDSYRCRCADGFKGKNCETVVNACVSEPCKNGGTCHVSTDEDEGYSCS 985

Human   993 CPTGFEGPTCGVNTDDCVDHACANGGVCVDGVGNYTCQCPLQYEGKACEQLVDLCSPDLNPCQHE 1057
            |..|||||:|.|:||:|.|:.|.||..|:||:.||||.|...|.|:.||.|.|:||...:||:.:
Zfish   986 CAAGFEGPSCEVDTDECRDNDCQNGATCIDGINNYTCLCAPFYTGEMCEDLEDMCSSARSPCKQQ 1050

Human  1058 AQCVGTPDGPRCECMPGYAGDNCSENQDDCRDHRCQNGAQCMDEVNSYSCLCAEGYSGQLCEIPP 1122
            :.|..|..||:|.|..||.|::||.|.|||:||||||||||:||:|.|||:|.:||||||||:  
Zfish  1051 STCFITVTGPKCICAAGYVGEDCSVNYDDCKDHRCQNGAQCVDELNGYSCVCQKGYSGQLCEV-- 1113

Human  1123 HLPAPKSPCEGTECQNGANCVDQGNRPVCQCLPGFGGPECEKLLSVNFVDRDTYLQFTDLQNWPR 1187
             .|.|:||||..:|||.|.||::...|:||||.|||||.||||:||||||||:||..:||:|||:
Zfish  1114 -APPPRSPCERADCQNNAPCVERAGHPLCQCLEGFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQ 1177

Human  1188 ANITLQVSTAEDNGILLYNGDNDHIAVELYQGHVRVSYDPGSYPSSAIYSAETINDGQFHTVELV 1252
            ||||||||||||||||||||||||||||:::|||:|||||||..|.||||.||:|||||||||||
Zfish  1178 ANITLQVSTAEDNGILLYNGDNDHIAVEIHEGHVKVSYDPGSQQSHAIYSTETVNDGQFHTVELV 1242

Human  1253 AFDQMVNLSIDGGSPMTMDNFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQILNGTGFHGCIRNL 1317
            .||||||||||||||.|||:|||...|..|||||||||||.|:..|.|:|||.|.:.|||||:||
Zfish  1243 TFDQMVNLSIDGGSPTTMDSFGKVQPLRGEAPLYVGGMPVSVHPTAPRVWQIQNSSSFHGCIQNL 1307

Human  1318 YINNELQDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPMCHCEAGWVGLHCDQPADGPCH 1382
            |||||||||||||||||||||||||||:||||||||||...||:|||:.||.|.|||||...||.
Zfish  1308 YINNELQDFTKTQMKPGVVPGCEPCRKIYCLHGICQPNTATGPVCHCQPGWSGQHCDQPLANPCM 1372

Human  1383 GHKCVHGQCVPLDALSYSCQCQDGYSGALCNQAGALAEPCRGLQCLHGHCQASGTKGAHCVCDPG 1447
            |.|||||:|:|:|..||.|:||:|:.||||||...|..|||.|||.|||||.|.|..|:|.|:||
Zfish  1373 GSKCVHGRCIPMDMQSYRCECQEGFHGALCNQHEELFNPCRKLQCKHGHCQISDTGDAYCHCEPG 1437

Human  1448 FSGELCEQESECRGDPVRDFHQVQRGYAICQTTRPLSWVECRGSCPGQGCCQGLRLKRRKFTFEC 1512
            :||:||::||||||:|||||:||||||:||||||.:|||||.|.|....||...|:||||::|||
Zfish  1438 YSGDLCDRESECRGEPVRDFYQVQRGYSICQTTRMVSWVECSGVCESGSCCASQRMKRRKYSFEC 1502

Human  1513 SDGTSFAEEVEKPTKCGCALC 1533
            |||.||:|||||..||||..|
Zfish  1503 SDGMSFSEEVEKTIKCGCVGC 1523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLIT1NP_003052.2 LRRNT 33..64 CDD:214470 24/30 (80%)
leucine-rich repeat 43..62 CDD:275380 14/18 (78%)
LRR_8 61..121 CDD:290566 50/59 (85%)
LRR 1 62..83 17/20 (85%)
leucine-rich repeat 63..86 CDD:275380 18/22 (82%)
LRR_4 64..101 CDD:289563 29/36 (81%)
LRR 2 86..107 17/20 (85%)
LRR_RI <87..220 CDD:238064 116/132 (88%)
leucine-rich repeat 87..110 CDD:275380 19/22 (86%)
LRR_8 109..169 CDD:290566 53/59 (90%)
LRR 3 110..131 19/20 (95%)
leucine-rich repeat 111..134 CDD:275380 20/22 (91%)
LRR 4 134..155 19/20 (95%)
leucine-rich repeat 135..158 CDD:275380 21/22 (95%)
LRR 5 158..179 17/20 (85%)
LRR_8 159..217 CDD:290566 51/57 (89%)
leucine-rich repeat 159..182 CDD:275380 18/22 (82%)
LRR 6 182..203 18/20 (90%)
leucine-rich repeat 183..206 CDD:275380 20/22 (91%)
leucine-rich repeat 207..334 CDD:275380 96/126 (76%)
TPKR_C2 219..264 CDD:301599 37/44 (84%)
LRRNT 282..313 CDD:214470 20/30 (67%)
LRR 7 310..331 17/20 (85%)
LRR_8 312..369 CDD:290566 51/56 (91%)
LRR_4 334..373 CDD:289563 36/38 (95%)
LRR 8 334..355 18/20 (90%)
leucine-rich repeat 335..358 CDD:275380 20/22 (91%)
LRR 9 358..379 20/20 (100%)
leucine-rich repeat 359..379 CDD:275380 19/19 (100%)
LRR 10 382..403 14/20 (70%)
leucine-rich repeat 383..406 CDD:275380 17/22 (77%)
LRR_8 389..441 CDD:290566 44/51 (86%)
LRR 11 406..427 19/20 (95%)
leucine-rich repeat 407..428 CDD:275380 18/20 (90%)
leucine-rich repeat 431..528 CDD:275380 83/96 (86%)
TPKR_C2 439..>469 CDD:301599 26/29 (90%)
LRRNT 513..542 CDD:214470 18/28 (64%)
leucine-rich repeat 529..566 CDD:275380 22/36 (61%)
LRR 12 541..562 13/20 (65%)
LRR_RI <544..627 CDD:238064 66/82 (80%)
LRR_8 544..601 CDD:290566 46/56 (82%)
LRR 13 566..587 19/20 (95%)
leucine-rich repeat 567..590 CDD:275380 21/22 (95%)
LRR_8 590..649 CDD:290566 49/58 (84%)
LRR 14 590..611 15/20 (75%)
leucine-rich repeat 591..614 CDD:275380 17/22 (77%)
LRR 15 614..635 18/20 (90%)
LRR_4 615..654 CDD:289563 32/38 (84%)
leucine-rich repeat 615..638 CDD:275380 20/22 (91%)
LRR 16 638..659 16/20 (80%)
leucine-rich repeat 639..660 CDD:275380 16/20 (80%)
leucine-rich repeat 663..762 CDD:275380 71/98 (72%)
LRRCT 671..719 CDD:214507 37/47 (79%)
LRRNT 733..765 CDD:214470 21/31 (68%)
LRR_8 761..820 CDD:290566 47/58 (81%)
LRR 17 762..783 14/20 (70%)
leucine-rich repeat 763..785 CDD:275380 14/21 (67%)
LRR 18 785..806 17/20 (85%)
LRR_4 786..827 CDD:289563 36/40 (90%)
leucine-rich repeat 786..809 CDD:275380 20/22 (91%)
LRR 19 809..830 18/20 (90%)
leucine-rich repeat 810..830 CDD:275380 17/19 (89%)
LRR 20 833..854 17/20 (85%)
leucine-rich repeat 834..857 CDD:275380 17/22 (77%)
LRRCT 866..915 CDD:214507 41/48 (85%)
EGF_CA 927..962 CDD:238011 15/34 (44%)
EGF_CA 966..1002 CDD:238011 20/35 (57%)
EGF_CA 1005..1041 CDD:238011 17/35 (49%)
EGF_CA 1044..1080 CDD:238011 14/35 (40%)
EGF_CA 1085..1119 CDD:238011 26/33 (79%)
EGF_CA <1136..1163 CDD:238011 16/26 (62%)
LamG 1189..1322 CDD:214598 104/132 (79%)
slit1aNP_001030140.1 LRRNT 26..57 CDD:214470 24/30 (80%)
leucine-rich repeat 36..55 CDD:275380 14/18 (78%)
LRR_8 54..114 CDD:290566 50/59 (85%)
leucine-rich repeat 56..79 CDD:275380 18/22 (82%)
leucine-rich repeat 80..103 CDD:275380 19/22 (86%)
LRR_8 102..162 CDD:290566 53/59 (90%)
LRR_RI <104..227 CDD:238064 107/122 (88%)
leucine-rich repeat 104..127 CDD:275380 20/22 (91%)
leucine-rich repeat 128..151 CDD:275380 21/22 (95%)
leucine-rich repeat 152..175 CDD:275380 18/22 (82%)
LRR_8 153..210 CDD:290566 51/56 (91%)
leucine-rich repeat 176..199 CDD:275380 20/22 (91%)
leucine-rich repeat 200..327 CDD:275380 96/126 (76%)
TPKR_C2 208..257 CDD:301599 39/48 (81%)
LRRNT 275..306 CDD:214470 20/30 (67%)
LRR_8 303..362 CDD:290566 52/58 (90%)
LRR_4 326..366 CDD:289563 36/39 (92%)
leucine-rich repeat 328..351 CDD:275380 20/22 (91%)
LRR_8 350..434 CDD:290566 73/83 (88%)
leucine-rich repeat 352..372 CDD:275380 19/19 (100%)
LRR_RI <394..620 CDD:238064 186/225 (83%)
leucine-rich repeat 400..423 CDD:275380 20/22 (91%)
leucine-rich repeat 424..521 CDD:275380 83/96 (86%)
leucine-rich repeat 522..559 CDD:275380 22/36 (61%)
LRR_8 558..618 CDD:290566 50/59 (85%)
leucine-rich repeat 560..583 CDD:275380 21/22 (95%)
leucine-rich repeat 584..607 CDD:275380 17/22 (77%)
LRR_8 607..666 CDD:290566 51/58 (88%)
leucine-rich repeat 608..631 CDD:275380 20/22 (91%)
leucine-rich repeat 632..653 CDD:275380 16/20 (80%)
leucine-rich repeat 656..747 CDD:275380 65/90 (72%)
LRRCT 664..712 CDD:214507 37/47 (79%)
leucine-rich repeat 748..778 CDD:275380 20/29 (69%)
LRR_8 754..813 CDD:290566 47/58 (81%)
LRR_4 755..794 CDD:289563 29/38 (76%)
LRR_4 777..820 CDD:289563 37/42 (88%)
leucine-rich repeat 779..802 CDD:275380 20/22 (91%)
leucine-rich repeat 803..823 CDD:275380 17/19 (89%)
leucine-rich repeat 827..850 CDD:275380 17/22 (77%)
LRRCT 859..908 CDD:214507 41/48 (85%)
EGF_CA 920..955 CDD:238011 15/34 (44%)
EGF_CA 958..996 CDD:238011 20/37 (54%)
EGF_CA 998..1034 CDD:238011 17/35 (49%)
EGF_CA 1078..1112 CDD:238011 26/33 (79%)
LamG 1179..1312 CDD:214598 104/132 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C194329346
Domainoid 1 1.000 258 1.000 Domainoid score I9253
eggNOG 1 0.900 - - E2759_KOG4237
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2302
Inparanoid 1 1.050 2421 1.000 Inparanoid score I279
NCBI 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45950
OrthoDB 1 1.010 - - D19272at7742
OrthoFinder 1 1.000 - - FOG0001593
OrthoInspector 1 1.000 - - oto49057
orthoMCL 1 0.900 - - OOG6_103623
Panther 1 1.100 - - LDO PTHR45836
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3290
SonicParanoid 1 1.000 - - X1145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 1 1.500 - -
1717.340

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