DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SLIT1 and slit1

DIOPT Version :9

Sequence 1:NP_003052.2 Gene:SLIT1 / 6585 HGNCID:11085 Length:1534 Species:Homo sapiens
Sequence 2:NP_001090702.1 Gene:slit1 / 100036682 XenbaseID:XB-GENE-1007728 Length:1529 Species:Xenopus tropicalis


Alignment Length:1528 Identity:1265/1528 - (82%)
Similarity:1380/1528 - (90%) Gaps:6/1528 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     8 GSSAGP--VRPELWLLLWAAAWRLGASACPALCTCTGTTVDCHGTGLQAIPKNIPRNTERLELNG 70
            ||...|  :|..:|:|.|:...::.|:.|||||||:||||||||..|:.:||||||:||||||.|
 Frog     5 GSPTFPLWLRAGVWILAWSWICQVCANGCPALCTCSGTTVDCHGLALKGVPKNIPRSTERLELYG 69

Human    71 NNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLPELLFQNNQAL 135
            ||||||:||||:|||||||||||||||..|||||||||||||||||||||||.||||||||||||
 Frog    70 NNITRINKNDFSGLKQLRVLQLMENQISNVERGAFDDMKELERLRLNRNQLHTLPELLFQNNQAL 134

Human   136 SRLDLSENAIQAIPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITTIPVSS 200
            ||||||||.|||||||.|||||:|||||||||||||||:||||||||||||||||||||.|||||
 Frog   135 SRLDLSENLIQAIPRKTFRGATELKNLQLDKNQISCIEDGAFRALRGLEVLTLNNNNITAIPVSS 199

Human   201 FNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLRGLNVAEVQKSEFSCSG 265
            |||||||||||||||:||||||||||||||||||||||||||:||:.||||||||:||.||||||
 Frog   200 FNHMPKLRTFRLHSNNLFCDCHLAWLSQWLRQRPTIGLFTQCTGPSPLRGLNVAEIQKHEFSCSG 264

Human   266 QGEAGRVPTCTLSSGSCPAMCTCSNGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFS 330
            |.:......|:||.||||||||||||||||||||||||||||||||||||||||||||:||||||
 Frog   265 QSDPPSSQICSLSIGSCPAMCTCSNGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSVPPGAFS 329

Human   331 PYRKLRRIDLSNNQIAEIAPDAFQGLRSLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINC 395
            ||:||||||||||||:|||||||||||||||||||||||||||:|||.||:.|||||||||||||
 Frog   330 PYKKLRRIDLSNNQISEIAPDAFQGLRSLNSLVLYGNKITDLPKGVFSGLHALQLLLLNANKINC 394

Human   396 IRPDAFQDLQNLSLLSLYDNKIQSLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIE 460
            ||.|.|||||||||||||||||||||||||.:|||||||||||||||||||||||||||||||||
 Frog   395 IRADTFQDLQNLSLLSLYDNKIQSLAKGTFAALRAIQTLHLAQNPFICDCNLKWLADFLRTNPIE 459

Human   461 TSGARCASPRRLANKRIGQIKSKKFRCSAKEQYFIPGTEDYQLNSECNSDVVCPHKCRCEANVVE 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||:|||:
 Frog   460 TSGARCASPRRLANKRIGQIKSKKFRCSAKEQYFIPGTEDYQLNSECNSDVVCPPKCRCESNVVD 524

Human   526 CSSLKLTKIPERIPQSTAELRLNNNEISILEATGMFKKLTHLKKINLSNNKVSEIEDGAFEGAAS 590
            ||:|||||||:||||||||||||||||:.|||||:|:||.|||||||||||:|||||.|||||||
 Frog   525 CSNLKLTKIPDRIPQSTAELRLNNNEIATLEATGLFRKLPHLKKINLSNNKISEIEDAAFEGAAS 589

Human   591 VSELHLTANQLESIRSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNQITTVSPG 655
            |||||||||.|||:||||||||:|||||||||||:||:|||||||||||||||||||||:|::||
 Frog   590 VSELHLTANHLESVRSGMFRGLEGLRTLMLRNNRVSCVHNDSFTGLRNVRLLSLYDNQISTITPG 654

Human   656 AFDTLQSLSTLNLLANPFNCNCQLAWLGGWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCE 720
            ||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
 Frog   655 AFDTLQSLSTLNLLANPFNCNCQLAWLGDWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCE 719

Human   721 EGQEEGGCLPRPQCPQECACLDTVVRCSNKHLRALPKGIPKNVTELYLDGNQFTLVPGQLSTFKY 785
            :||||..|.|:|||||||.|||||||||||||.:||||||||||||||||||||:||||||:|||
 Frog   720 DGQEELSCAPQPQCPQECTCLDTVVRCSNKHLLSLPKGIPKNVTELYLDGNQFTMVPGQLSSFKY 784

Human   786 LQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDISTLQEG 850
            |||||||||||||||||||||||||||||||||:|||||||||:|||||||||:||||||:|.||
 Frog   785 LQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNSLQCIPPLAFEGLRSLRLLSVHGNDISSLPEG 849

Human   851 IFADVTSLSHLAIGANPLYCDCHLRWLSSWVKTGYKEPGIARCAGPQDMEGKLLLTTPAKKFECQ 915
            ||:|||||||||||||||||||:|||||:||||||||||||||.||.:|:||||||||||||||.
 Frog   850 IFSDVTSLSHLAIGANPLYCDCNLRWLSNWVKTGYKEPGIARCTGPPEMDGKLLLTTPAKKFECN 914

Human   916 GPPTLAVQAKCDLCLSSPCQNQGTCHNDPLEVYRCACPSGYKGRDCEVSLDSCSSGPCENGGTCH 980
            |||:|.:.|||:.|||.||:|||||.:|.::.|:|.||:|:||::||:||::|||.||||.|.|.
 Frog   915 GPPSLNILAKCNPCLSDPCKNQGTCQDDAVQYYKCVCPAGFKGKNCEISLNACSSNPCENQGLCL 979

Human   981 AQEGEDAPFTCSCPTGFEGPTCGVNTDDCVDHACANGGVCVDGVGNYTCQCPLQYEGKACEQLVD 1045
            ::| |.:.|.|:|..|||||||.||.|||....|.|||.|:||:.||||.||.||.|:.||.|||
 Frog   980 SKE-EGSGFMCTCADGFEGPTCAVNKDDCKYSDCENGGTCLDGINNYTCLCPSQYTGEYCEHLVD 1043

Human  1046 LCSPDLNPCQHEAQCVGTPDGPRCECMPGYAGDNCSENQDDCRDHRCQNGAQCMDEVNSYSCLCA 1110
            :||.|||||..:::|..||:||:|||.|||.||:||.|.|||:||||||.|.|:||||.|||||.
 Frog  1044 ICSTDLNPCHSDSKCTVTPEGPKCECAPGYGGDDCSLNYDDCKDHRCQNNALCVDEVNGYSCLCT 1108

Human  1111 EGYSGQLCEIPPHLPAPKSPCEGTECQNGANCVDQGNRPVCQCLPGFGGPECEKLLSVNFVDRDT 1175
            |||||||||:|...|   |||:.|.|||||||::.||..||||||||||.:||||||||||||||
 Frog  1109 EGYSGQLCEMPSQAP---SPCKLTPCQNGANCIEVGNSAVCQCLPGFGGSKCEKLLSVNFVDRDT 1170

Human  1176 YLQFTDLQNWPRANITLQVSTAEDNGILLYNGDNDHIAVELYQGHVRVSYDPGSYPSSAIYSAET 1240
            |||||||||||||||||||||||||||||||||:||:|||||||||||||||||:||||||||||
 Frog  1171 YLQFTDLQNWPRANITLQVSTAEDNGILLYNGDHDHMAVELYQGHVRVSYDPGSFPSSAIYSAET 1235

Human  1241 INDGQFHTVELVAFDQMVNLSIDGGSPMTMDNFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQIL 1305
            ||||||||||||.||||||||||||:|||||.|||||||||||||||||||||||||||||||||
 Frog  1236 INDGQFHTVELVTFDQMVNLSIDGGAPMTMDKFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQIL 1300

Human  1306 NGTGFHGCIRNLYINNELQDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPMCHCEAGWVG 1370
            |||.||||||||||||||||||||||||||||||||||||:||||||||||..||:||||.||.|
 Frog  1301 NGTSFHGCIRNLYINNELQDFTKTQMKPGVVPGCEPCRKLFCLHGICQPNAANGPVCHCETGWAG 1365

Human  1371 LHCDQPADGPCHGHKCVHGQCVPLDALSYSCQCQDGYSGALCNQAGALAEPCRGLQCLHGHCQAS 1435
            .||||..:.||.|||||||.|:|||||:|||.|||||.||||||.|.|..||:.|||.||.||.|
 Frog  1366 PHCDQQLNDPCQGHKCVHGACMPLDALTYSCLCQDGYKGALCNQQGELYNPCKTLQCQHGRCQIS 1430

Human  1436 GTKGAHCVCDPGFSGELCEQESECRGDPVRDFHQVQRGYAICQTTRPLSWVECRGSCPGQGCCQG 1500
            ....|:|.|:.|:.|:.|:|||||||:||||::|||||||||||||.:|||||||||..||||.|
 Frog  1431 DLGEAYCECESGYVGDNCDQESECRGEPVRDYYQVQRGYAICQTTRTVSWVECRGSCHNQGCCTG 1495

Human  1501 LRLKRRKFTFECSDGTSFAEEVEKPTKCGCALC 1533
            ||:||||:|||||||:||.|:||||.|||||.|
 Frog  1496 LRMKRRKYTFECSDGSSFVEDVEKPIKCGCAQC 1528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLIT1NP_003052.2 LRRNT 33..64 CDD:214470 22/30 (73%)
leucine-rich repeat 43..62 CDD:275380 13/18 (72%)
LRR_8 61..121 CDD:290566 53/59 (90%)
LRR 1 62..83 17/20 (85%)
leucine-rich repeat 63..86 CDD:275380 19/22 (86%)
LRR_4 64..101 CDD:289563 31/36 (86%)
LRR 2 86..107 18/20 (90%)
LRR_RI <87..220 CDD:238064 123/132 (93%)
leucine-rich repeat 87..110 CDD:275380 20/22 (91%)
LRR_8 109..169 CDD:290566 55/59 (93%)
LRR 3 110..131 19/20 (95%)
leucine-rich repeat 111..134 CDD:275380 21/22 (95%)
LRR 4 134..155 18/20 (90%)
leucine-rich repeat 135..158 CDD:275380 20/22 (91%)
LRR 5 158..179 18/20 (90%)
LRR_8 159..217 CDD:290566 55/57 (96%)
leucine-rich repeat 159..182 CDD:275380 21/22 (95%)
LRR 6 182..203 19/20 (95%)
leucine-rich repeat 183..206 CDD:275380 21/22 (95%)
leucine-rich repeat 207..334 CDD:275380 109/126 (87%)
TPKR_C2 219..264 CDD:301599 39/44 (89%)
LRRNT 282..313 CDD:214470 30/30 (100%)
LRR 7 310..331 19/20 (95%)
LRR_8 312..369 CDD:290566 53/56 (95%)
LRR_4 334..373 CDD:289563 37/38 (97%)
LRR 8 334..355 19/20 (95%)
leucine-rich repeat 335..358 CDD:275380 21/22 (95%)
LRR 9 358..379 19/20 (95%)
leucine-rich repeat 359..379 CDD:275380 18/19 (95%)
LRR 10 382..403 17/20 (85%)
leucine-rich repeat 383..406 CDD:275380 20/22 (91%)
LRR_8 389..441 CDD:290566 47/51 (92%)
LRR 11 406..427 20/20 (100%)
leucine-rich repeat 407..428 CDD:275380 19/20 (95%)
leucine-rich repeat 431..528 CDD:275380 93/96 (97%)
TPKR_C2 439..>469 CDD:301599 29/29 (100%)
LRRNT 513..542 CDD:214470 23/28 (82%)
leucine-rich repeat 529..566 CDD:275380 31/36 (86%)
LRR 12 541..562 17/20 (85%)
LRR_RI <544..627 CDD:238064 71/82 (87%)
LRR_8 544..601 CDD:290566 49/56 (88%)
LRR 13 566..587 18/20 (90%)
leucine-rich repeat 567..590 CDD:275380 20/22 (91%)
LRR_8 590..649 CDD:290566 53/58 (91%)
LRR 14 590..611 18/20 (90%)
leucine-rich repeat 591..614 CDD:275380 20/22 (91%)
LRR 15 614..635 18/20 (90%)
LRR_4 615..654 CDD:289563 34/38 (89%)
leucine-rich repeat 615..638 CDD:275380 20/22 (91%)
LRR 16 638..659 17/20 (85%)
leucine-rich repeat 639..660 CDD:275380 17/20 (85%)
leucine-rich repeat 663..762 CDD:275380 89/98 (91%)
LRRCT 671..719 CDD:214507 46/47 (98%)
LRRNT 733..765 CDD:214470 28/31 (90%)
LRR_8 761..820 CDD:290566 56/58 (97%)
LRR 17 762..783 19/20 (95%)
leucine-rich repeat 763..785 CDD:275380 19/21 (90%)
LRR 18 785..806 20/20 (100%)
LRR_4 786..827 CDD:289563 39/40 (98%)
leucine-rich repeat 786..809 CDD:275380 22/22 (100%)
LRR 19 809..830 19/20 (95%)
leucine-rich repeat 810..830 CDD:275380 18/19 (95%)
LRR 20 833..854 17/20 (85%)
leucine-rich repeat 834..857 CDD:275380 18/22 (82%)
LRRCT 866..915 CDD:214507 42/48 (88%)
EGF_CA 927..962 CDD:238011 18/34 (53%)
EGF_CA 966..1002 CDD:238011 19/35 (54%)
EGF_CA 1005..1041 CDD:238011 20/35 (57%)
EGF_CA 1044..1080 CDD:238011 22/35 (63%)
EGF_CA 1085..1119 CDD:238011 27/33 (82%)
EGF_CA <1136..1163 CDD:238011 19/26 (73%)
LamG 1189..1322 CDD:214598 125/132 (95%)
slit1NP_001090702.1 LRRNT 32..63 CDD:214470 22/30 (73%)
leucine-rich repeat 42..61 CDD:275380 13/18 (72%)
leucine-rich repeat 62..85 CDD:275380 19/22 (86%)
LRR <70..>218 CDD:227223 136/147 (93%)
leucine-rich repeat 86..109 CDD:275380 20/22 (91%)
leucine-rich repeat 110..133 CDD:275380 21/22 (95%)
leucine-rich repeat 134..157 CDD:275380 20/22 (91%)
leucine-rich repeat 158..181 CDD:275380 21/22 (95%)
leucine-rich repeat 182..205 CDD:275380 21/22 (95%)
leucine-rich repeat 206..310 CDD:275380 87/103 (84%)
TPKR_C2 214..263 CDD:387596 42/48 (88%)
LRRNT 281..312 CDD:214470 30/30 (100%)
internalin_A 310..>681 CDD:380193 339/370 (92%)
leucine-rich repeat 312..333 CDD:275380 19/20 (95%)
leucine-rich repeat 334..357 CDD:275380 21/22 (95%)
leucine-rich repeat 358..378 CDD:275380 18/19 (95%)
leucine-rich repeat 406..429 CDD:275380 20/22 (91%)
leucine-rich repeat 522..540 CDD:275380 14/17 (82%)
internalin_A 531..>865 CDD:380193 300/333 (90%)
leucine-rich repeat 541..565 CDD:275380 19/23 (83%)
leucine-rich repeat 566..589 CDD:275380 20/22 (91%)
leucine-rich repeat 590..613 CDD:275380 20/22 (91%)
leucine-rich repeat 614..637 CDD:275380 20/22 (91%)
leucine-rich repeat 638..661 CDD:275380 19/22 (86%)
leucine-rich repeat 662..784 CDD:275380 110/121 (91%)
leucine-rich repeat 663..753 CDD:275380 82/89 (92%)
LRR_8 785..843 CDD:338972 54/57 (95%)
leucine-rich repeat 785..808 CDD:275380 22/22 (100%)
leucine-rich repeat 809..832 CDD:275380 20/22 (91%)
leucine-rich repeat 833..853 CDD:275380 16/19 (84%)
PCC 841..>978 CDD:188093 101/136 (74%)
EGF 967..999 CDD:333761 18/32 (56%)
EGF_CA 1003..1039 CDD:238011 20/35 (57%)
EGF_CA 1042..1078 CDD:238011 22/35 (63%)
EGF_CA 1083..1117 CDD:238011 27/33 (82%)
EGF 1126..1155 CDD:333761 20/28 (71%)
LamG 1184..1317 CDD:214598 125/132 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 274 1.000 Domainoid score I10495
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2302
Inparanoid 1 1.050 2701 1.000 Inparanoid score I322
NCBI 1 1.000 - -
OMA 1 1.010 - - QHG45950
OrthoDB 1 1.010 - - D13455at32523
OrthoFinder 1 1.000 - - FOG0001593
OrthoInspector 1 1.000 - - oto154953
Panther 1 1.100 - - LDO PTHR45836
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3290
SonicParanoid 1 1.000 - - X1145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1414.110

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