DRSC/TRiP Functional Genomics Resources

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Protein Alignment SLC18A1 and Vmat

DIOPT Version :10

Sequence 1:NP_003044.1 Gene:SLC18A1 / 6570 HGNCID:10934 Length:525 Species:Homo sapiens
Sequence 2:NP_001014525.1 Gene:Vmat / 3346192 FlyBaseID:FBgn0260964 Length:646 Species:Drosophila melanogaster


Alignment Length:505 Identity:265/505 - (52%)
Similarity:337/505 - (66%) Gaps:73/505 - (14%)


- Green bases have known domain annotations that are detailed below.


Human    17 RASRQLVLVVVFVALLLDNMLFTVVVPIVPTFLYDMEFKEVNSSLHLGHAGSSPHALASPAFSTI 81
            |.|.:||||:|.:||||||||.|.||||:|.||||:...:                         
  Fly   135 RGSNRLVLVIVAIALLLDNMLLTTVVPIIPEFLYDIRHPD------------------------- 174

Human    82 FSFFNNNTVAVEESVPSGIAWMNDTASTIPPPAT----------------EAISAHKNNCLQGTG 130
                     |..:|.|     .....|.:|||.|                ..||..:|...... 
  Fly   175 ---------APLDSFP-----RTPLTSNVPPPPTPCPCNKDGSEAAPLEISTISPEENETYYRE- 224

Human   131 FLEE-------EITRVGVLFASKAVMQLLVNPFVGPLTNRIGYHIPMFAGFVIMFLSTVMFAFSG 188
             |||       |...||:||||||.:||||||.|||||:||||.||||||||||||||::|||..
  Fly   225 -LEERHNELVGETVEVGLLFASKAFVQLLVNPIVGPLTHRIGYSIPMFAGFVIMFLSTIIFAFGR 288

Human   189 TYTLLFVARTLQGIGSSFSSVAGLGMLASVYTDDHERGRAMGTALGGLALGLLVGAPFGSVMYEF 253
            :|.:|||||.|||||||.|||:|:||||..:|||.|||.|||.||||||||:|:|.|||.|||||
  Fly   289 SYLVLFVARALQGIGSSCSSVSGMGMLADRFTDDKERGNAMGIALGGLALGVLIGPPFGGVMYEF 353

Human   254 VGKSAPFLILAFLALLDGALQLCILQPS----KVSPESAKGTPLFMLLKDPYILVAAGSICFANM 314
            |||||||||||.|||.||.|||.:||||    :..|.|.|.     |:.|||||:|||:|.||||
  Fly   354 VGKSAPFLILAALALGDGLLQLFMLQPSIQKAETEPPSLKS-----LISDPYILIAAGAITFANM 413

Human   315 GVAILEPTLPIWMMQTMCSPKWQLGLAFLPASVSYLIGTNLFGVLANKMGRWLCSLIGMLVVGTS 379
            |:|:|||:||:||:..|.:.:|:.|:||||||:||||||||||.|.:|:|||..:.:|::::|..
  Fly   414 GIAMLEPSLPLWMVDNMGATRWEQGVAFLPASISYLIGTNLFGPLGHKIGRWFAACLGLIIIGGC 478

Human   380 LLCVPLAHNIFGLIGPNAGLGLAIGMVDSSMMPIMGHLVDLRHTSVYGSVYAIADVAFCMGFAIG 444
            |:.:|:|.:|..||.||||||.|||||||||||.:|:|||:||::|||||||:.|||||:|||:|
  Fly   479 LIFIPMATSITHLIIPNAGLGFAIGMVDSSMMPELGYLVDIRHSAVYGSVYALGDVAFCVGFAVG 543

Human   445 PSTGGAIVKAIGFPWLMVITGVINIVYAPLCYYLRSPPAKEEKLAILSQD 494
            |:..|::||:|||.|::....::..:||||...|::||..:||...::::
  Fly   544 PALSGSLVKSIGFEWMLFGIAILCFMYAPLLTLLKNPPTSDEKKVRMARE 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLC18A1NP_003044.1 MFS_SLC18A1_2_VAT1_2 131..479 CDD:340942 224/358 (63%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 503..525
VmatNP_001014525.1 MFS_SLC18A1_2_VAT1_2 141..578 CDD:340942 257/482 (53%)
Blue background indicates that the domain is not in the aligned region.

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