DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SLC12A2 and VHC1

DIOPT Version :10

Sequence 1:NP_001037.1 Gene:SLC12A2 / 6558 HGNCID:10911 Length:1212 Species:Homo sapiens
Sequence 2:NP_009794.3 Gene:VHC1 / 852537 SGDID:S000000439 Length:1120 Species:Saccharomyces cerevisiae


Alignment Length:936 Identity:241/936 - (25%)
Similarity:414/936 - (44%) Gaps:188/936 - (20%)


- Green bases have known domain annotations that are detailed below.


Human   264 ESTPTRDAVVT-YTAESKGVVKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGQAGIGLSVLVIMMA 327
            ::||....|.: |..::....|.|...||.|...||:..:::|:|..:|:||.||..::.:::::
Yeast    41 QATPECQKVSSKYDPDNPNKDKLGTYDGVFVPTALNVLSILMFLRFGFILGQLGIICTIGLLLLS 105

Human   328 TVVTTITGLSTSAIATNGFVRGGGAYYLISRSLGPEFGGAIGLIFAFANAVAVAMYVVGFAETVV 392
            ..:..:|.||.|||:|||.||||||||:|||||||||||:|||:|.........|..||..|.::
Yeast   106 YTINLLTTLSISAISTNGTVRGGGAYYMISRSLGPEFGGSIGLVFFLGQVFNAGMNAVGIIEPLL 170

Human   393 ----------------ELLKE---HSILMIDEINDIRIIGAITVVILLGISVA--GMEWEAKAQI 436
                            |||..   |....            .||::.|..|||  |.:..::|..
Yeast   171 YNLGYSAQGEPPAALGELLPRGHWHEFTY------------ATVILFLCFSVAFVGSQTVSRAGN 223

Human   437 VLLVILLLAIGDFVIGTFIPLESKKPKGFFGYKS---EIFNENFGPD---------FREEETFFS 489
            :|.::|..:|  |.|.....:.|...:|...|..   :.|::|..|.         .:.:|||..
Yeast   224 ILFLVLAASI--FSIPLSALIRSPFTEGGISYTGPSWQTFHDNLLPHLTKGAAGSLLKGKETFND 286

Human   490 VFAIFFPAATGILAGANISGDLADPQSAIPKGTLLAILITTLVYVGIAVSVGSCVVRDATGNVND 554
            :|.:||||..||.|||.:|.:|..|..:||||||..:|.|.:.|..:..|:|..:.|.:      
Yeast   287 LFGVFFPATAGIFAGAGMSSELRKPSKSIPKGTLWGLLFTFICYAVVVFSMGCSIPRRS------ 345

Human   555 TIVTELTNCTSAACKLNFDFSSCESSPCSYGLMNNFQVMSMVSGFTPLISAGIFSATLSSALASL 619
                                           |.:..|::..:|....:|..|..:.:|.|.:..:
Yeast   346 -------------------------------LYDEVQIIQTISSVQWVIFMGEMATSLFSIIVGM 379

Human   620 VSAPKIFQALCKDNIYPAFQMFAKGYGKNNEPLRGYILTFLIALGFILIAELNVIAPIISNFFLA 684
            :.|..:.:|:.||||.|..::||      :.||...|.|:::. ...|.:::|.||..|:..||.
Yeast   380 LGAAYVLEAIAKDNIIPGLEIFA------HSPLYSLIFTWILT-QLCLFSDVNKIATFITMTFLM 437

Human   685 SYALINFSVFHASLAKSPGWRPAFKYYNMWISLLGAILCCIVMFVINWWAALLTYVIVLGLYIYV 749
            ::.::|.:.|...::.:|.:||:|||:|.:.:.:||:|..:.|.:::..:|.:.::.::.|::::
Yeast   438 TFVVMNLACFLLGISSAPNFRPSFKYFNRYTTAIGALLSVVAMLIVDGISASVLFLAMILLFLFI 502

Human   750 TYKKPDVNWGSSTQALTYLNALQHSIRLSGVEDHVKNFRPQCLVMTGAPNSRPALLHLVHDFTKN 814
            .|..|..:||..:|:|.|....::.:||.  :|::|.:|||.|:....|.:...|:...:...|.
Yeast   503 HYFSPPKSWGDVSQSLIYHQVRKYLLRLR--QDNIKYWRPQILLFVDNPRTSWNLIRFCNHLKKG 565

Human   815 VGLMICGHVHMG---PRRQAMKEMSIDQAKYQRWLIKNKMKAFYAPVHADDLREGAQYLMQAAGL 876
             ||.|.|||.:.   |::  :.|:...|..:.:......:|||........|..|.:.:...:||
Yeast   566 -GLYILGHVAVTADFPKQ--LNELKTQQKAWMKIRDMAAIKAFVQVGTGPSLIWGIRNVFIGSGL 627

Human   877 GRMKPNTLVLGFKKDWLQADMRDVDMYINLFHDAFDIQYGVVVIRLKEGLDISHLQGQEELLSSQ 941
            |.||||..|:||         .|::.|..               .:.:....::||.|.|:.::.
Yeast   628 GGMKPNITVVGF---------FDLESYRK---------------HIPQSRSQNNLQKQVEIKATV 668

Human   942 EKSPGTKDVVVSVEYSKKSDLDTSKPLSEKPITHKVEEEDGKTATQPLLKKESKGPIVPLNVA-- 1004
            .:|. ..||.::|..          |..|.....||..:......:.|...:|       |:|  
Yeast   669 PRST-CSDVKINVPL----------PTDECKNETKVNVQQWVQIVEDLSLMQS-------NIAIA 715

Human  1005 -DQKLLEASTQFQKKQGKNTIDVWWL-------------------FDDGGLTLLIPYLLTTKKKW 1049
             ..|.||...:......|.|||::.:                   ||...|.|.:..:|.|..:|
Yeast   716 HGFKNLEIPNKRDSCFPKKTIDLYPIQMCGKVEAKGDQPAAITTNFDTYTLILQLAAILVTVPEW 780

Human  1050 K---DCKIRVFIGGKINRIDHDRRAMATLLSKFRIDFSDIMVLGD----INTKPKKENIIAFEEI 1107
            |   ..::.:|:..:.:|.:..:| |..||...|||...::|..|    .||      |:..:.|
Yeast   781 KRTHSLRVILFVEQEYHRTNETQR-MKKLLQVLRIDAEVLVVSLDQFRVYNT------IVKGDPI 838

Human  1108 IEPYRLHEDDKEQDIADKMKEDEPWR 1133
            :..|          :..|:.::|.|:
Yeast   839 VFDY----------VNSKLADNEWWK 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLC12A2NP_001037.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 36..81
RFXV motif 1. /evidence=ECO:0000269|PubMed:16669787 80..83
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 112..138
RFXV motif 2. /evidence=ECO:0000269|PubMed:16669787 138..141
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 150..193
2a30 216..1212 CDD:273347 241/936 (26%)
Scissor helix. /evidence=ECO:0000269|PubMed:35585053, ECO:0000269|PubMed:36306358, ECO:0007744|PDB:7MXO, ECO:0007744|PDB:7N3N, ECO:0007744|PDB:7S1X, ECO:0007744|PDB:7SFL, ECO:0007744|PDB:7SMP 761..778 4/16 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 962..989 4/26 (15%)
VHC1NP_009794.3 AA_permease_2 45..824 CDD:459263 230/884 (26%)
Blue background indicates that the domain is not in the aligned region.

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