DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SLC6A4 and GlyT

DIOPT Version :9

Sequence 1:NP_001036.1 Gene:SLC6A4 / 6532 HGNCID:11050 Length:630 Species:Homo sapiens
Sequence 2:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster


Alignment Length:620 Identity:245/620 - (39%)
Similarity:368/620 - (59%) Gaps:72/620 - (11%)


- Green bases have known domain annotations that are detailed below.


Human    53 PGAG--DDTRHSIPATTTTLVAELHQGERETWGKKVDFLLSVIGYAVDLGNVWRFPYICYQNGGG 115
            ||||  .::.|                ||.||..:.|||||::||:|.|||||||||:||.||||
  Fly    45 PGAGGAGESEH----------------ERGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGG 93

Human   116 AFLLPYTIMAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYAICIIAFYIASYYNTIM 180
            |||:|:|||.:..|:||.:|||:.|||...|.::::|:.||:|:|:|..:.:::..:..|||.|:
  Fly    94 AFLIPFTIMLVIAGLPLMFMELSFGQYAALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLII 158

Human   181 AWALYYLISSFTDQLPWTSCKNSWNTGNCTNYFSED-----NITW---TLHSTS----------- 226
            ||.::|:.:||...|||.:|:.:|:|..|.:|...|     |.|:   |.|:.:           
  Fly   159 AWTIFYMFASFAPVLPWQNCEPAWSTKYCFSYAQADQCEATNGTYYLRTCHNATSAAENNITTLA 223

Human   227 -------PAEEFYTRHVLQIHRSKGLQDLGGISWQLALCIMLIFTVIYFSIWKGVKTSGKVVWVT 284
                   ||||::...||.:  |||:::.|.|...||.|:.|.:|:::..:.|||::|||||:.|
  Fly   224 LGALKRPPAEEYFNNFVLGL--SKGIEETGSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFT 286

Human   285 ATFPYIILSVLLVRGATLPGAWRGVLFYLKPNWQKLLETGVWIDAAAQIFFSLGPGFGVLLAFAS 349
            |.|||::|.:|.|||.|||||..|:||||.|:|::|....||.|||.||||:|.|.:|.|:..:|
  Fly   287 ALFPYVVLVILFVRGVTLPGASTGILFYLTPDWKQLANAQVWGDAAVQIFFALSPAWGGLITLSS 351

Human   350 YNKFNNNCYQDALVTSVVNCMTSFVSGFVIFTVLGYMAEMRNEDVSEVAKDAGPSLLFITYAEAI 414
            ||||:||||:|:|:.:..|..|||.:|.|||:::|::|...|.||.:|. |.|..|.||.|.|.:
  Fly   352 YNKFSNNCYKDSLIVAFCNIATSFFAGLVIFSIIGFLAHELNVDVEKVV-DQGAGLAFIVYPEVV 415

Human   415 ANMPASTFFAIIFFLMLITLGLDSTFAGLEGVITAVLDEFPH-----VWAKRRERFVLAVVITCF 474
            ..:|.|..:|::||:||:||||||.||.:|.|.||:||.||:     :|.      ||:|.|..:
  Fly   416 TRLPVSPVWAVLFFVMLLTLGLDSQFALMETVTTAILDRFPNLRQYKIWV------VLSVAIFGY 474

Human   475 FGSLVTLTFGGAYVVKLLEEYATGPAVLTVALIEAVAVSWFYGITQFCRDVKEMLGFSPGWFWR- 538
            .|.|...|..|.|.::|:::||...:||.:|:.|.:.::|.||..:|..|::.|:| ...|||. 
  Fly   475 IGGLGFTTNSGMYWLQLMDKYAANWSVLLIAISECILIAWIYGSQRFLNDIQGMIG-KRSWFWNF 538

Human   539 ---ICWVAISPLFLLFIICSFLMSPPQLRLFQYNYPYWSIILGYCIGTSSFICIPTYIAYRLIIT 600
               |.|..|:|..||||:....:.....:...|.||.|:..:|:.:|....:.| ..:|::.|..
  Fly   539 FWGIMWRYITPATLLFILFFNWVEYKPAKYGHYVYPMWADAVGWIVGLLPVLVI-FLVAFQEIWR 602

Human   601 PG---TFKERIIKSITPET---PTEIPCGDIRLNA 629
            ..   :|::||...:.|..   |...||  :.|:|
  Fly   603 APMSLSFRDRIKHLLQPTAEWGPAGRPC--VNLHA 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLC6A4NP_001036.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..59 4/7 (57%)
5HT_transport_N 24..64 CDD:397524 5/12 (42%)
SLC6sbd_SERT 79..615 CDD:271399 233/573 (41%)
Interaction with RAB4A 616..624 3/10 (30%)
GlyTNP_611836.2 SNF 57..603 CDD:249680 230/556 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.