Protein Alignment Rnf130 and meu34

DIOPT Version :9

• Sequence 1: XP_038942740.1
• Gene: Rnf130 / 652955
• RGDID: 1562041
• Length: 439
• Species: Rattus norvegicus
• Sequence 2: NP_593329.1
• Gene: meu34 / 2543036
• PomBaseID: SPAC3A12.03c
• Length: 309
• Species: Schizosaccharomyces pombe
• Alignment Length: 221
• Identity: 48/221 - (21%)
• Similarity: 75/221 - (33%)
• Gaps: 93/221 - (42%)

  Rat    99 PNIKQWIALLQ---RGNCTFKEKISRAAFHNAVAVVIYNNKSKEEPVTMTHPGTGDIIAVMITEL 160
            |.|| |:...:   :|..||                 .:|:|:.:.|.:  .|.|:..:|:||
pombe   116 PYIK-WLKKRKGHAKGESTF-----------------LDNRSENQSVIV--QGQGETPSVIIT-- 158

  Rat   161 RGKDILSYLEKNISVQMTIAVGTRMPPKNFSRGSLVFVSISFIVLMIISSAWLIFYFIQKIRYTN 225
                                ...|.|    :.||..||.:|
pombe   159 --------------------YDVRRP----NLGSTSFVEMS------------------------ 175

  Rat   226 ARDRNQRRLGDAAKKAISKLTTRTVKKGDKETD-----PDFDHCAVCIESYKQNDVVRVLPCKHV 285
                          .|:|.:.......||...|     .:.|.|.:|...|..:|::|||||:||
pombe   176 --------------SALSNIYNTDASDGDSSDDSCLLEDEEDFCIICYADYAFDDILRVLPCEHV 226

  Rat   286 FHKSCVDPWLSE-HCTCPMCKLNILK 310
            ||..|:|.|::. ..:||:|..:..|
pombe   227 FHTQCIDTWMTTMKASCPLCNEDYYK 252

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rnf130	XP_038942740.1	PA_GRAIL_like	40..179	CDD:239037	15/82 (18%)
		HRD1	<197..366	CDD:227568	29/120 (24%)
		RING-H2_RNF130	262..310	CDD:319717	20/48 (42%)
meu34	NP_593329.1	RING	205..249	CDD:238093	19/43 (44%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	1	1.000	-	-		otm64399
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	2.000