DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SLC6A1 and GlyT

DIOPT Version :9

Sequence 1:NP_001335179.1 Gene:SLC6A1 / 6529 HGNCID:11042 Length:599 Species:Homo sapiens
Sequence 2:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster


Alignment Length:576 Identity:243/576 - (42%)
Similarity:353/576 - (61%) Gaps:51/576 - (8%)


- Green bases have known domain annotations that are detailed below.


Human    43 DRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQY 107
            :|.||.||||||:|.:||::||||||||||||..|||||||||:.:.|:.||:||..:|.|.|||
  Fly    56 ERGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGGAFLIPFTIMLVIAGLPLMFMELSFGQY 120

Human   108 TSIGGLGVW-KLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTD 171
            .::|.:.|: :..|:|:|:|....::|..:.:||.:||:|.|:|::.||...|||:.|:..|:|.
  Fly   121 AALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLIIAWTIFYMFASFAPVLPWQNCEPAWSTK 185

Human   172 RCFS------------NYSMVNTTNMTSA-----------------VVEFWERNMHQMTDGLDKP 207
            .|||            .|.:....|.|||                 ..|::...:..::.|:::.
  Fly   186 YCFSYAQADQCEATNGTYYLRTCHNATSAAENNITTLALGALKRPPAEEYFNNFVLGLSKGIEET 250

Human   208 GQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYI 272
            |.|:..||..|.:||.:|:.|:.|||..:||||||:|.:||::|:|||.||||||||..|||||:
  Fly   251 GSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTALFPYVVLVILFVRGVTLPGASTGILFYL 315

Human   273 TPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFV 337
            ||::::|::::||.|||.||||:.....|.||.|.|||.|.||.|:||:||...|..||.|||.|
  Fly   316 TPDWKQLANAQVWGDAAVQIFFALSPAWGGLITLSSYNKFSNNCYKDSLIVAFCNIATSFFAGLV 380

Human   338 IFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVE 402
            ||||:||:||.....:..|...|.||||:.|||.||:||:||:||:|||.|||.||:||||..:|
  Fly   381 IFSIIGFLAHELNVDVEKVVDQGAGLAFIVYPEVVTRLPVSPVWAVLFFVMLLTLGLDSQFALME 445

Human   403 GFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFE 467
            ...||::|.:|. ||..:...:.:|.|..|:.||...|..|:|..:|.|.|:|: .|:|.:...|
  Fly   446 TVTTAILDRFPN-LRQYKIWVVLSVAIFGYIGGLGFTTNSGMYWLQLMDKYAAN-WSVLLIAISE 508

Human   468 CVSISWFYGVNRFYDNIQEMVGSRPCIW---WKLCWSFFTPIIVAGVFIFSAVQMTPLTMGNYVF 529
            |:.|:|.||..||.::||.|:|.|...|   |.:.|.:.||..:..:..|:.|:..|...|:||:
  Fly   509 CILIAWIYGSQRFLNDIQGMIGKRSWFWNFFWGIMWRYITPATLLFILFFNWVEYKPAKYGHYVY 573

Human   530 PKWGQGVGWLMALSSMVLIPGYMAYMFLT---------LKGSLKQRIQVMVQPSED 576
            |.|...|||::.|..:::|       ||.         :..|.:.||:.::||:.:
  Fly   574 PMWADAVGWIVGLLPVLVI-------FLVAFQEIWRAPMSLSFRDRIKHLLQPTAE 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLC6A1NP_001335179.1 SLC6sbd_GAT1 2..599 CDD:212075 243/576 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..599 243/576 (42%)
PDZ-binding 597..599
GlyTNP_611836.2 SNF 57..603 CDD:249680 238/554 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.820

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