DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MESK4 and Ssadh

DIOPT Version :9

Sequence 1:NP_001262650.1 Gene:MESK4 / 64872 FlyBaseID:FBgn0043069 Length:280 Species:Drosophila melanogaster
Sequence 2:NP_001014665.1 Gene:Ssadh / 43092 FlyBaseID:FBgn0039349 Length:509 Species:Drosophila melanogaster


Alignment Length:280 Identity:50/280 - (17%)
Similarity:80/280 - (28%) Gaps:94/280 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SEDSPLNPCLTEVLRNCANIQSLESLNYEYNDVLLTEDNVGKMITPNPYSFSGNISISSCPSEDV 76
            |||:||.......|...|.|..                .|..::|.|..:..|::...|.....:
  Fly   203 SEDTPLTALAVAKLAVDAGIPK----------------GVINVVTTNKAAPIGDLFCKSPDVRGI 251

  Fly    77 SFSESILEDNGRISLAYENLKTIPRRLADKFAAQTKFLDLSHND------------FRNL----- 124
            ||:.|  .:.|:  |.:.|.....:|:..:......|:.....|            |||.     
  Fly   252 SFTGS--TEVGK--LLFRNSADGIKRICLELGGNAPFIVFDSADIEKAVDGAMASKFRNCGQTCV 312

  Fly   125 ---RFLSFFED-------------LDTLILDRNVNLDINTFPYLPSLRILWINNCDIANITDWIH 173
               ||  |.:|             ::.|.:......|:...|.        ||......::.::.
  Fly   313 SANRF--FVQDSVYDKFVGQLKKRVEALKIGDGQGCDVQIGPL--------INEMQFNKVSGFVE 367

  Fly   174 RIERHCPALDQLSCMGNPGIRTVFGGQGPREYILQVLPQLKYLDGLPTSRNAAYA-TLSSSQGQG 237
                     |..|...|    .:.|||                 .||...:..|| |:.:.....
  Fly   368 ---------DARSKKAN----IILGGQ-----------------PLPDKGSLFYAPTIVTDVPPS 402

  Fly   238 PDSTSNSEKPPLASAFTFKD 257
            ....|.....|:.|...|:|
  Fly   403 AQLYSEEVFGPVVSIIRFRD 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MESK4NP_001262650.1 leucine-rich repeat 111..132 CDD:275378 8/40 (20%)
leucine-rich repeat 133..154 CDD:275378 3/20 (15%)
leucine-rich repeat 155..181 CDD:275378 2/25 (8%)
SsadhNP_001014665.1 ALDH_F5_SSADH_GabD 49..503 CDD:143421 50/280 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1012
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.