DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rem2 and Rgk1

DIOPT Version :9

Sequence 1:NP_073176.2 Gene:Rem2 / 64626 RGDID:69081 Length:341 Species:Rattus norvegicus
Sequence 2:NP_725875.3 Gene:Rgk1 / 14462605 FlyBaseID:FBgn0264753 Length:1379 Species:Drosophila melanogaster


Alignment Length:352 Identity:97/352 - (27%)
Similarity:149/352 - (42%) Gaps:102/352 - (28%)


- Green bases have known domain annotations that are detailed below.


  Rat    62 GVPRRRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLG-----------SGEAALAQK--- 112
            ||..|..|:      :.||:::.:.:     |||:.|::.|.           |...:||..   
  Fly  1058 GVVNRGDSL------KSRRSRSNNSV-----ASSNSSTEHLTTQQQLSAPASVSARTSLASSRES 1111

  Rat   113 ------DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYER--RIMVDKEEVTLIVY 169
                  :|.::|::||...||||:|...|...:..:|::....:::.|:  .:::..||..||..
  Fly  1112 STSNPGNGPYRVLMLGGPAVGKSSLVSQFMTSEYLHAYDTSIDDESGEKAVSVLLSGEESELIFI 1176

  Rat   170 DIWEQGDAGGWLQ---DHCLQTGD--AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 229
            |       .|:.:   |.||...|  .:.:::|..||.|||...:.|..|...:......||||.
  Fly  1177 D-------HGYTEMTPDECLTNYDPHGYCVIYSAADRSSFSVAEQVLQVLWTNQNIAQKAVILVS 1234

  Rat   230 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRGHAGGQRPEP 294
            ||:||||||.|:.|||:.:|....||.||||..::||..||..|.:.||||:.       :.||.
  Fly  1235 NKADLARSRLVTSEEGKAMATAYDCKFIETSVGINHNVDELLVGLLSQIRLKL-------ENPEK 1292

  Rat   295 S----------------------------SPDGP------APP-----------TRRESLTKKAK 314
            |                            :|.||      .||           ..|.|.:.|.|
  Fly  1293 SRDLFRKRSIRKSKRRACSPLNAGCLNANTPLGPLGEAVATPPGSAQSSPRKYRGSRTSTSLKVK 1357

  Rat   315 RFLANLVPRNAKFFKQRSRSCHDLSVL 341
            ..|..:..|::|     |:||.:|.||
  Fly  1358 GLLGRVWTRDSK-----SKSCENLHVL 1379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rem2NP_073176.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..72 4/9 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..106 6/32 (19%)
RGK 116..341 CDD:206715 80/276 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 282..309 9/71 (13%)
Rgk1NP_725875.3 DUF2967 459..715 CDD:288079
P-loop_NTPase 1121..1379 CDD:304359 80/276 (29%)
small_GTPase 1121..1286 CDD:197466 60/171 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D301527at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8910
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45775
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X743
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.020

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