DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nphs1 and side-VI

DIOPT Version :9

Sequence 1:NP_072150.1 Gene:Nphs1 / 64563 RGDID:620460 Length:1252 Species:Rattus norvegicus
Sequence 2:NP_001036705.1 Gene:side-VI / 4379854 FlyBaseID:FBgn0083950 Length:1087 Species:Drosophila melanogaster


Alignment Length:921 Identity:184/921 - (19%)
Similarity:311/921 - (33%) Gaps:276/921 - (29%)


- Green bases have known domain annotations that are detailed below.


  Rat   348 LQVTFPPSAITILGSVSQSE-------------------NKNVTLCCLTKSSR--PRVLLRWWLG 391
            :..|.|.....|:|:::.:.                   |.:..:.|...||:  .:|||..|. 
  Fly     1 MSFTGPILICLIMGAITHANSHEHADGFKPDGEILRVLVNSSAQIKCDVGSSQADDKVLLVVWY- 64

  Rat   392 GRQLLPTDETVMDGLHGG--------HISMSNLTFLVRREDNGLPLTCEAFSDAFS---KETFKK 445
             :..||.......|.|.|        .:......|...:|...|.:......||.:   :..||.
  Fly    65 -KNNLPIYSYDTRGAHAGTPSHWRDEEVLEDRAVFRTHKEPAELIINPVKEKDAGNFRCRVDFKL 128

  Rat   446 SLTLN-------VKYPAQ-------KLWIE---GPPEGQYIRTGTRVRLVCLAIGGNPDPSLIWF 493
            |.|.|       |..|.|       :|.|:   ||.|     .|..:.:.|:..||:|.|::||.
  Fly   129 SQTRNSNVNLEVVVPPTQPIIFNERRLRIDSRAGPYE-----EGGSLEVTCVVYGGSPPPTVIWL 188

  Rat   494 KDSRPVSEPRQPQEPRRVQLGSVEKS-------GSTFSRELVLIIGPPDNRAKFSCKAGQLS--- 548
            .:                  |.::.|       |:..|:.:|..:......|.::|:|....   
  Fly   189 MN------------------GQLQNSVVDYTYDGAINSKLVVRNLSRIHQHAVYTCQASNFHKKY 235

  Rat   549 ASTQLVVQ--FPPTNLTILANSSALRPGDALNLTCVSISSNPPVNLSWDKEGERLEDVAAKPQSA 611
            .:|.:.:.  ..|..:.|..|:..:.......:.|.:|.|.||..::|......|.   ...|..
  Fly   236 VATNITIDLYLRPLLVEISFNNQPMSADRKYEIECQAIGSRPPAKITWWMGNLELH---GHSQKV 297

  Rat   612 PFKGSAASRSVFLRVSSRDHGQRVTCRAHSEALRETV-SSFYRFNVLYPPEF---LGEQVRAVTV 672
            ...|:.::..:.:..:..|||:.::|||.:|.:|..: .:..:.||.:.|..   ||..:....:
  Fly   298 SEDGNVSTSVLSITPTREDHGKALSCRATNELVRNGIRETAMKLNVFFIPTLQLDLGSNLNPEDI 362

  Rat   673 VEQGQVLLPVSVSANPAPEAFNWTFRGYRLSPAGGPRHRILSGGALQLWNVTRADDGFYQLHCQN 737
            .|...|.....|.||||.....|. ..:::.........|:|.|.|.|..|||...|.|.....|
  Fly   363 EEGDDVYFECKVHANPAAYKVVWK-HNHQIIQHNQRAGVIVSSGDLALQGVTRHQAGNYTCTASN 426

  Rat   738 SEGTAEA-LLKLDVHYAPTIRALRDPTEVNVGG-----SVDIVCTVDANPILPEMFSWERLGEEE 796
            .||..:: :::|.|.|.|..|    |.:..:.|     :.:|||.|||.| .||.|.|       
  Fly   427 VEGDGDSNVVELKVMYKPICR----PDQKKIYGVARNEAAEIVCEVDAFP-PPENFKW------- 479

  Rat   797 EDLNLDDMEKVSKGSTGRLRIRQAKLSQAGAYQCIVDNGVAPAARGLVRLVVRFAPQVDQPTPLT 861
                       |..:|.    ....:.|:|                       |.|...|.:.||
  Fly   480 -----------SFNNTA----ETFDMPQSG-----------------------FRPHSAQGSTLT 506

  Rat   862 KVAAAGDSTSSATLHCRARGVPNIDFTWTKNGVPLDLQDPRYTEHRYHQGVVHSSLLTIANVSAA 926
                                                     ||..:                  .
  Fly   507 -----------------------------------------YTPVK------------------E 512

  Rat   927 QDYALFKCTATNALG--SDHTNIQLVSISRPDPPLGLKVVSISPHSVGLEWKPGFDGGLPQRFQI 989
            .|:....|.|.|.:|  .:.....|::..:|:.|....||:.:..|:.:....|||||:.|.|.:
  Fly   513 MDFGTIMCWADNNVGQQKEPCVFHLIAAGKPEAPTNCTVVNQTSDSLEVYCIEGFDGGMRQWFLM 577

  Rat   990 R-YEALETPGFLHVDVLPTQATTFTLTGLKPSTRYRIWLLASNALGDS------GLTDKGIQ--- 1044
            . ::  :..|.|..:: ..:....::|||.....:||::.|.|..|.|      |.|.|..:   
  Fly   578 EIFD--QHSGQLQANI-SAKFAALSVTGLDAGRLFRIYVYAVNGRGRSDAIALDGYTLKAAEKQT 639

  Rat  1045 VSVTT-PGPDQAPEDTDHQLPTELPPGPPRLPLLPVLFAVGGLLLLSNASCVG-GLLWRRRLR-- 1105
            |::|: .|..|:|::.:            ..|:|.:...||.|:.:   .|:| |.:...:||  
  Fly   640 VALTSYKGSAQSPDNFE------------LTPILSIGIFVGILVAI---VCIGIGTIAALKLRSH 689

  Rat  1106 -------------------------RLAEEISEKTEAGSE--------DRIRNEYEESQWTGDRD 1137
                                     :::..:|...|...|        :.:..||::...|....
  Fly   690 KHQQQQKFVHPNAKFSRPGNLQIKDKISLPLSHSEEMYDEKNPDVVPYNEVDGEYKQKSATQTPS 754

  Rat  1138 TRSSTVSTAEV 1148
            ...||.|..|:
  Fly   755 GHLSTTSEVEI 765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nphs1NP_072150.1 Ig 52..128 CDD:299845
IG_like 52..127 CDD:214653
C2-set_2 155..242 CDD:285423
Ig_3 256..335 CDD:290638
IG_like 268..350 CDD:214653 0/1 (0%)
C2-set_2 358..440 CDD:285423 20/113 (18%)
I-set 460..555 CDD:254352 21/107 (20%)
Ig 472..555 CDD:299845 17/92 (18%)
Ig 563..646 CDD:299845 18/82 (22%)
IG_like 670..750 CDD:214653 22/80 (28%)
Ig 676..750 CDD:299845 21/74 (28%)
Ig_3 753..834 CDD:290638 19/85 (22%)
IG_like 762..848 CDD:214653 17/90 (19%)
Ig 848..956 CDD:299845 13/109 (12%)
IG_like 859..949 CDD:214653 9/91 (10%)
FN3 955..1049 CDD:238020 27/103 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1043..1067 5/27 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1113..1144 7/38 (18%)
side-VINP_001036705.1 IG_like 35..140 CDD:214653 23/106 (22%)
Ig_3 157..230 CDD:290638 20/95 (21%)
IG_like 165..242 CDD:214653 18/99 (18%)
Ig 265..343 CDD:299845 17/80 (21%)
IG_like 267..343 CDD:214653 17/78 (22%)
IG_like 363..440 CDD:214653 22/77 (29%)
IGc2 364..429 CDD:197706 19/65 (29%)
IG_like 456..532 CDD:214653 27/180 (15%)
Ig_3 456..524 CDD:290638 25/172 (15%)
fn3 545..622 CDD:278470 21/79 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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