DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDH24 and hmr-1

DIOPT Version :10

Sequence 1:NP_071923.2 Gene:CDH24 / 64403 HGNCID:14265 Length:819 Species:Homo sapiens
Sequence 2:NP_001021650.1 Gene:hmr-1 / 173007 WormBaseID:WBGene00001980 Length:2920 Species:Caenorhabditis elegans


Alignment Length:739 Identity:192/739 - (25%)
Similarity:308/739 - (41%) Gaps:135/739 - (18%)


- Green bases have known domain annotations that are detailed below.


Human    53 VIEEYAGPEPVLIGKLHSDVDRGE--GRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKA-- 113
            ||||......||.....:|.|:.|  .|..|.|.|:||..||.|.:.:|.|.:.|:|||:..|  
 Worm  1445 VIEEDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFRIGKYSGTIELVKALDRDPPAGV 1509

Human   114 -QYVLLAQAVDRASNRPLEPPSEFIIKVQDINDNPPIFP---LGPYHATVPEMSNVGTSVIQVTA 174
             .:..:.||:|...| .|...::..:.|:|||||.||||   .|........:.:.|...:.|.|
 Worm  1510 PSWNFVVQAIDDDGN-GLVGYADVQVNVRDINDNSPIFPERLFGYIEENREPIHSDGVYFMDVQA 1573

Human   175 HDADDPSYGNSAKLVYTV-----LDGLPFFSVDPQTGVVRTAIPNMDRE--TQEEFLVVIQAKDM 232
            .|.|||:..| |.:.|.:     ::|...|.:|..||.: .|:.::|||  ::.||::.::|.|.
 Worm  1574 RDFDDPTTEN-ANIEYGIVRNKLINGESVFRIDQNTGKI-FAMRSLDREISSEREFIIEVRANDR 1636

Human   233 GGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTLVGRLRAQDPD--LGDNALMA 295
            |  :....|...||:.::|:|||.|.|.::.|:.||.|||..|..|....|.|.|  ..|| :..
 Worm  1637 G--VPSREGFANVTIKVTDMNDNAPFFEKTRYEGSVEETAPIGAAVMSFSAFDADEEAKDN-VFT 1698

Human   296 YSILDGEGSEAFSISTDLQGRD---GLLTVRKPLDFE--SQR-SYSFRVEATNTLIDPAYLRRGP 354
            |.:  .|.|:.|.::||...:.   |:|.|::|||:|  :|| .:...:..::          |.
 Worm  1699 YQL--SEESDYFYVTTDKDSKQSSVGVLRVKQPLDYEDVTQRDGFHLGIRVSD----------GR 1751

Human   355 FKDVASVRVAVQDAPEPPAFTQAAYHLTVPENKAPGTLVGQISAADLDSPASPIRYSILPHSDPE 419
            ....|:|.||:.|..:.......|....|.|:...||.:|:.:|.|.|: ....|:.|...|||:
 Worm  1752 HDAEAAVHVALVDRNDHAPHIHGATEHRVREDVPRGTSIGRYTATDRDA-GDTARFRINRQSDPK 1815

Human   420 RCFSIQPEEGTIHTAAPLDREARAWHNLTVLA----TELGWSW-----------GPERGWVPLLV 469
            |.|:|. ::||:..|..||||..|.:||.:.|    ..:|...           |||...||   
 Worm  1816 RQFTID-QDGTLRVAHTLDREDIAVYNLIIEAYDNSNNIGRQMVAVYLQDVNDNGPEPYTVP--- 1876

Human   470 AEWSAPAAPPQRSPVG--------------SAVGIP-----QDSSAQASRVQVAIQTLDENDNAP 515
                .|....:.:||.              :..|.|     ..|...:..:.|......:..|..
 Worm  1877 ----RPCIFRENTPVNQLGTCEIRATDRDTAEFGPPFTMEVSPSFKYSQYLNVIFNANGDGGNGS 1937

Human   516 QLAEPYDTFVCDSAAPGQLIQVIRALDRDEVGNSSHVSFQGPLGPDANFTVQDN--RDGSASLLL 578
            ....|...|..::..||:::::...| .|..|..:..|....:| |.|    ||  .||..::.:
 Worm  1938 MTITPLQEFDREAPVPGKILEIPLIL-ADRAGRRNEASVHVIIG-DLN----DNTMHDGRMTIHV 1996

Human   579 PSRPAPPRHA----PYLVPIELWDWGQPA-----------LSSTATVTVSVCRCQPDGSVASCWP 628
            .|.....:..    .|:...:.||.|...           ||...::|::       |.:|:   
 Worm  1997 NSYLGRLKETVIGRVYVDDADDWDLGDKTFSWKDSRPGFELSDKGSITMA-------GEMAA--- 2051

Human   629 EAHLSAAGL--------STGALLAIITCVGALLALVVLFVALRRQKQEALMVLEEEDVR--ENII 683
            ..:..:|.:        :.|.:..|:..|..        :|...|....|::.||..::  ::.|
 Worm  2052 GTYTMSANVHDNARDEDAVGYVTVIVNAVPQ--------IAFDNQGSVQLLIAEETPLQLPDDFI 2108

Human   684 TYDDEGGGEEDTEAFDITALQNPD 707
            ..|..|....||...::||....|
 Worm  2109 RADSNGQSLMDTFKQEMTAYMGGD 2132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDH24NP_071923.2 CA 70..148 CDD:214520 30/82 (37%)
Cadherin_repeat 154..255 CDD:206637 29/107 (27%)
Cadherin_repeat 264..368 CDD:206637 33/111 (30%)
Cadherin_repeat 379..513 CDD:206637 40/167 (24%)
CA_like 521..615 CDD:481204 22/110 (20%)
CADH_Y-type_LIR 751..812 CDD:460041
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 768..800
hmr-1NP_001021650.1 Cadherin_repeat 431..521 CDD:206637
Cadherin_repeat 534..638 CDD:206637
Cadherin_repeat 647..742 CDD:206637
Cadherin_repeat 752..861 CDD:206637
Cadherin_repeat 875..975 CDD:206637
Cadherin_repeat 983..1085 CDD:206637
Cadherin_repeat 1103..1206 CDD:206637
Cadherin_repeat 1216..1331 CDD:206637
Cadherin_repeat 1340..1432 CDD:206637
Cadherin_repeat 1443..1542 CDD:206637 34/97 (35%)
Cadherin_repeat 1553..1657 CDD:206637 29/107 (27%)
Cadherin_repeat 1666..1768 CDD:206637 34/114 (30%)
Cadherin_repeat 1779..1868 CDD:206637 28/90 (31%)
EGF_CA 2250..2283 CDD:238011
LamG 2286..2459 CDD:238058
LamG 2533..2679 CDD:473984
Blue background indicates that the domain is not in the aligned region.

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