DRSC/TRiP Functional Genomics Resources

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Protein Alignment TRA2B and sqd

DIOPT Version :10

Sequence 1:NP_004584.1 Gene:TRA2B / 6434 HGNCID:10781 Length:288 Species:Homo sapiens
Sequence 2:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster


Alignment Length:331 Identity:73/331 - (22%)
Similarity:121/331 - (36%) Gaps:89/331 - (26%)


- Green bases have known domain annotations that are detailed below.


Human    13 ESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTR-----SR 72
            |:..|..:||.:|   |:.:..|.|..::|.|    |......|...:.:..|.|:.:     |.
  Fly    28 ENGDAGAAGSTNG---SSDNQSAASGQRDDDR----KLFVGGLSWETTEKELRDHFGKYGEIESI 85

Human    73 SRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCC------LGVFGLSLYTTE 131
            :.....:..|||.:: .....::.:...:|....|:.|....||...      :.|.||:...::
  Fly    86 NVKTDPQTGRSRGFA-FIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISD 149

Human   132 RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN----VDDAKEAKERANGMELDGRRIRVD 192
            .:::..|.::|.|.:|.:.:|:|..:.:||.|:.|::    .|..|..|::..|.|:|.:|    
  Fly   150 EEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKR---- 210

Human   193 FSITKRPHTPTPGIYMGRPT-----------------------------------YGSSRRRDYY 222
              .|.:|.....|...|.|.                                   ||:....|||
  Fly   211 --ATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYY 273

Human   223 D----RGYDRGYDDRDY----YSRSYRGGGG-----------------GGGGWRAAQDRDQIYRR 262
            .    .|||.|||...|    ....|.||||                 ||||:...:.|....|:
  Fly   274 AGGYYNGYDYGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGGGGPKGGGGFNGGKQRGGGGRQ 338

Human   263 RSPSPY 268
            :...||
  Fly   339 QRHQPY 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRA2BNP_004584.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..114 21/105 (20%)
RRM_TRA2 117..196 CDD:409798 20/88 (23%)
Linker 193..230 13/75 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 196..225 10/67 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..288 12/44 (27%)
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 11/71 (15%)
RRM2_hnRNPD_like 137..211 CDD:240775 20/79 (25%)

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