DRSC/TRiP Functional Genomics Resources

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Protein Alignment SRSF4 and lark

DIOPT Version :10

Sequence 1:NP_005617.2 Gene:SRSF4 / 6429 HGNCID:10786 Length:494 Species:Homo sapiens
Sequence 2:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster


Alignment Length:367 Identity:82/367 - (22%)
Similarity:133/367 - (36%) Gaps:75/367 - (20%)


- Green bases have known domain annotations that are detailed below.


Human     3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIV 67
            :::||.|..:.:..::...|:.||.::|.|:...||||..:..:...||:..|||..|....:.|
  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV 72

Human    68 EHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTY 132
            |.|:..|                      .|.|.|. ::.|.||:.:....::::..::.|.|..
  Fly    73 EAAKSRR----------------------APNTPTT-KIFVGNLTDKTRAPEVRELFQKYGTVVE 114

Human   133 ADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL------VEDKPGS-------RRRRS 184
            .|.   .:|.|.:......|::.|:::|:|..|:|:.:::      |..|||.       |..||
  Fly   115 CDI---VRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRS 176

Human   185 YSRSRSHSR---SRSRSRHSRKSRSRSGSSKSSHSKS------------RSRSRSGSR------- 227
            ...|:...|   |....|......|..|.....:.:.            |.|...|.|       
  Fly   177 GHWSKECPRLYGSAGGGREPPSPLSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDR 241

Human   228 ----SRSKSRSRSQ-SRSR-------SKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNN 280
                ||.....|.| ||.|       |::|....|.......||.|..:.......:.......:
  Fly   242 RFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPPPPRS 306

Human   281 DNVGKPKSRSPSRHKSKSKSRSRSQERRVEEE-KRGSVSRGR 321
            .| |..:..||:.|..:..||....||.:... .||....||
  Fly   307 SN-GMSRYGSPTPHGYEDFSRDAFDERMISSRGMRGPSPPGR 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SRSF4NP_005617.2 RRM1_SRSF4 1..87 CDD:410007 22/83 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 72..95 1/22 (5%)
RRM2_SRSF4_like 104..175 CDD:410012 15/76 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 169..494 43/201 (21%)
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 18/64 (28%)
RRM1_2_CoAA_like 87..152 CDD:409779 14/67 (21%)
hnRNP-R-Q <88..>258 CDD:273732 35/172 (20%)

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