back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment SETMAR and Setmar

DIOPT Version :9

Sequence 1:	NP_006506.3	Gene:	SETMAR / 6419	HGNCID:	10762	Length:	684	Species:	Homo sapiens
Sequence 2:	NP_001020219.1	Gene:	Setmar / 500281	RGDID:	1565882	Length:	315	Species:	Rattus norvegicus

Alignment Length:	316	Identity:	242/316 - (76%)
Similarity:	264/316 - (83%)	Gaps:	3/316 - (0%)

- Green bases have known domain annotations that are detailed below.

Human     1 MFAEAAKTTRPCGMAEFKEKPEAPTEQLDVACGQENLPVGAWPPGAA--PAPFQYTPDHVVGPGA 63
            |.|||.|.. ...:|..:|:.||..||.|||||.|||||..||.||.  |.|||||||||.|||.
  Rat     1 MSAEAVKKL-SFEIAPSEEESEATIEQQDVACGLENLPVSLWPLGAGPRPKPFQYTPDHVAGPGV 64

Human    64 DIDPTQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCSDHC 128
            |:||||||||||.|:||||:|||||||||..||:||.||||:||..|||:|||||||||:|.:||
  Rat    65 DMDPTQITFPGCACIKTPCVPGTCSCLRHESNYNDNLCLRDVGSEAKYAKPVFECNVLCQCGEHC 129

Human   129 RNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTKSDSNYI 193
            ||||||.||||..|||:|.||||||||||:||||||||||||||||||||||||||||..|.|||
  Rat   130 RNRVVQSGLQFLLQVFQTEKKGWGLRTLEYIPKGRFVCEYAGEVLGFSEVQRRIHLQTAHDPNYI 194

Human   194 IAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEEL 258
            ||:|||.||||||||||||||||||||||||||||||||||||||||||||||||||||:|.|||
  Rat   195 IALREHTYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDILPGEEL 259

Human   259 SYDYSGRYLNLTVSEDKERLDHGKLRKPCYCGAKSCTAFLPFDSSLYCPVEKSNIS 314
            |||||||:||...|:||||:|.|:.||||||||:||..|||:|||||.|:|....|
  Rat   260 SYDYSGRFLNQISSKDKERIDCGQPRKPCYCGAQSCATFLPYDSSLYGPLENPGTS 315

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.