Sequence 1: | NP_001032413.1 | Gene: | Lrrc4 / 641521 | RGDID: | 1560026 | Length: | 652 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001369108.1 | Gene: | Fili / 5740472 | FlyBaseID: | FBgn0085397 | Length: | 789 | Species: | Drosophila melanogaster |
Alignment Length: | 695 | Identity: | 163/695 - (23%) |
---|---|---|---|
Similarity: | 270/695 - (38%) | Gaps: | 148/695 - (21%) |
- Green bases have known domain annotations that are detailed below.
Rat 13 WNAVLLPVVYLTAQVWILCAAIAAAASAGPQNCPSVCSC--SNQFSKVVCTRRGLSEVPQGIPSN 75
Rat 76 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNAIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 140
Rat 141 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 205
Rat 206 NIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 268
Rat 269 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWL-AWWLREYIPTNSTCCGRCHAPM 332
Rat 333 HM-RGRYLVEVDQASFQCSA----------PFIMDAPRDL-----NISE---------------- 365
Rat 366 --DRMAELKCRTPPMS---SVKWL--LPNGTV------LSHASRHPRISVLNDGTLNFSRVLLID 417
Rat 418 TGVYTCMVTNVAGNSNASAYLNVSSAELNTPNFSFFTTVTVETTEISPEDITRKYKPVPTTSTGY 482
Rat 483 QPAYTTSTTVLIQTTRVPKQVPVPSTDTTDKMQT-------SLDEVMKTTKIIIGCFVAVTLLAA 540
Rat 541 AML---IVFY-----KLRKRHQQRSTVTAARTVEIIQVDEDI-----PAAASAAATAAPSG---V 589
Rat 590 SGEGAVV-----LPTIHDHINYNTYKP--AHGAHWTENSLGNSLH 627 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lrrc4 | NP_001032413.1 | LRRNT | 45..78 | CDD:214470 | 11/34 (32%) |
LRR_8 | 74..132 | CDD:404697 | 17/57 (30%) | ||
LRR 1 | 75..96 | 6/20 (30%) | |||
leucine-rich repeat | 76..99 | CDD:275380 | 6/22 (27%) | ||
PPP1R42 | 96..300 | CDD:411060 | 66/205 (32%) | ||
LRR 2 | 99..120 | 7/20 (35%) | |||
leucine-rich repeat | 100..123 | CDD:275380 | 7/22 (32%) | ||
LRR 3 | 123..144 | 7/20 (35%) | |||
leucine-rich repeat | 124..147 | CDD:275380 | 8/22 (36%) | ||
LRR 4 | 147..168 | 7/20 (35%) | |||
leucine-rich repeat | 148..171 | CDD:275380 | 7/22 (32%) | ||
LRR 5 | 171..193 | 6/21 (29%) | |||
leucine-rich repeat | 172..196 | CDD:275380 | 6/23 (26%) | ||
LRR 6 | 196..217 | 6/22 (27%) | |||
leucine-rich repeat | 197..218 | CDD:275380 | 7/22 (32%) | ||
LRR 7 | 218..239 | 8/20 (40%) | |||
leucine-rich repeat | 219..242 | CDD:275380 | 10/22 (45%) | ||
LRR 8 | 242..263 | 6/20 (30%) | |||
leucine-rich repeat | 243..266 | CDD:275380 | 8/22 (36%) | ||
LRR 9 | 266..287 | 8/20 (40%) | |||
leucine-rich repeat | 267..288 | CDD:275380 | 7/20 (35%) | ||
LRRCT | 299..350 | CDD:214507 | 10/52 (19%) | ||
IG_like | 358..440 | CDD:214653 | 21/115 (18%) | ||
Ig strand B | 369..373 | CDD:409353 | 1/3 (33%) | ||
Ig strand C | 380..384 | CDD:409353 | 1/3 (33%) | ||
Ig strand E | 406..410 | CDD:409353 | 0/3 (0%) | ||
Ig strand F | 420..425 | CDD:409353 | 0/4 (0%) | ||
Ig strand G | 433..436 | CDD:409353 | 0/2 (0%) | ||
Fili | NP_001369108.1 | leucine-rich repeat | 75..97 | CDD:275378 | 6/22 (27%) |
leucine-rich repeat | 98..121 | CDD:275380 | 7/22 (32%) | ||
LRR_8 | 120..180 | CDD:404697 | 20/60 (33%) | ||
leucine-rich repeat | 122..145 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 146..169 | CDD:275380 | 7/22 (32%) | ||
LRR | <161..>354 | CDD:227223 | 57/208 (27%) | ||
leucine-rich repeat | 170..193 | CDD:275380 | 6/23 (26%) | ||
leucine-rich repeat | 194..217 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 218..265 | CDD:275380 | 18/46 (39%) | ||
leucine-rich repeat | 266..289 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 290..313 | CDD:275380 | 5/22 (23%) | ||
leucine-rich repeat | 314..338 | CDD:275380 | 8/38 (21%) | ||
LRR_8 | 337..397 | CDD:404697 | 9/59 (15%) | ||
leucine-rich repeat | 339..360 | CDD:275380 | 4/20 (20%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 141 | 1.000 | Inparanoid score | I4398 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.960 |