| Sequence 1: | NP_071407.4 | Gene: | CDH23 / 64072 | HGNCID: | 13733 | Length: | 3354 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_063134984.1 | Gene: | Cdh23 / 114102 | RGDID: | 619760 | Length: | 3351 | Species: | Rattus norvegicus |
| Alignment Length: | 3353 | Identity: | 3170/3353 - (94%) |
|---|---|---|---|
| Similarity: | 3275/3353 - (97%) | Gaps: | 4/3353 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Human 3 RH-VATSCHVAWLLVLISGCWGQVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLAQDMDNDPLV 66
Human 67 FGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPT 131
Human 132 FHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSQFFAIDSARGIVTVIRELDYE 196
Human 197 TTQAYQLTVNATDQDKTRPLSTLANLAIIITDVQDMDPIFINLPYSTNIYEHSPPGTTVRIITAI 261
Human 262 DQDKGRPRGIGYTIVSGNTNSIFALDYISGVLTLNGLLDRENPLYSHGFILTVKGTELNDDRTPS 326
Human 327 DATVTTTFNILVIDINDNAPEFNSSEYSVAITELAQVGFALPLFIQVVDKDENLGLNSMFEVYLV 391
Human 392 GNNSHHFIISPTSVQGKADIRIRVAIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDN 456
Human 457 RPIFSQPLYNISLYENVTVGTSVLTVLATDNDAGTFGEVSYFFSDDPDRFSLDKDTGLIMLIARL 521
Human 522 DYELIQRFTLTIIARDGGGEETTGRVRINVLDVNDNVPTFQKDAYVGALRENEPSVTQLVRLRAT 586
Human 587 DEDSPPNNQITYSIVSASAFGSYFDISLYEGYGVISVSRPLDYEQISNGLIYLTVMAMDAGNPPL 651
Human 652 NSTVPVTIEVFDENDNPPTFSKPAYFVSVVENIMAGATVLFLNATDLDRSREYGQESIIYSLEGS 716
Human 717 TQFRINARSGEITTTSLLDRETKSEYILIVRAVDGGVGHNQKTGIATVNITLLDINDNHPTWKDA 781
Human 782 PYYINLVEMTPPDSDVTTVVAVDPDLGENGTLVYSIQPPNKFYSLNSTTGKIRTTHAMLDRENPD 846
Human 847 PHEAELMRKIVVSVTDCGRPPLKATSSATVFVNLLDLNDNDPTFQNLPFVAEVLEGIPAGVSIYQ 911
Human 912 VVAIDLDEGLNGLVSYRMPVGMPRMDFLINSSSGVVVTTTELDRERIAEYQLRVVASDAGTPTKS 976
Human 977 STSTLTIHVLDVNDETPTFFPAVYNVSVSEDVPREFRVVWLNCTDNDVGLNAELSYFITGGNVDG 1041
Human 1042 KFSVGYRDAVVRTVVGLDRETTAAYMLILEAIDNGPVGKRHTGTATVFVTVLDVNDNRPIFLQSS 1106
Human 1107 YEASVPEDIPEGHSILQLKATDADEGEFGRVWYRILHGNHGNNFRIHVSNGLLMRGPRPLDRERN 1171
Human 1172 SSHVLIVEAYNHDLGPMRSSVRVIVYVEDINDEAPVFTQQQYSRLGLRETAGIGTSVIVVQATDR 1236
Human 1237 DSGDGGLVNYRILSGAEGKFEIDESTGLIITVNYLDYETKTSYMMNVSATDQAPPFNQGFCSVYI 1301
Human 1302 TLLNELDEAVQFSNASYEAAILENLALGTEIVRVQAYSIDNLNQITYRFNAYTSTQAKALFKIDA 1366
Human 1367 ITGVITVQGLVDREKGDFYTLTVVADDGGPKVDSTVKVYITVLDENDNSPRFDFTSDSAVSIPED 1431
Human 1432 CPVGQRVATVKAWDPDAGSNGQVVFSLASGNIAGAFEIVTTNDSIGEVFVARPLDREELDHYILQ 1496
Human 1497 VVASDRGTPPRKKDHILQVTILDINDNPPVIESPFGYNVSVNENVGGGTAVVQVRATDRDIGINS 1561
Human 1562 VLSYYITEGNKDMAFRMDRISGEIATRPAPPDRERQSFYHLVATVEDEGTPTLSATTHVYVTIVD 1626
Human 1627 ENDNAPMFQQPHYEVLLDEGPDTLNTSLITIQALDLDEGPNGTVTYAIVAGNIVNTFRIDRHMGV 1691
Human 1692 ITAAKELDYEISHGRYTLIVTATDQCPILSHRLTSTTTVLVNVNDINDNVPTFPRDYEGPFEVTE 1756
Human 1757 GQPGPRVWTFLAHDRDSGPNGQVEYSIMDGDPLGEFVISPVEGVLRVRKDVELDRETIAFYNLTI 1821
Human 1822 CARDRGMPPLSSTMLVGIRVLDINDNDPVLLNLPMNITISENSPVSSFVAHVLASDADSGCNARL 1886
Human 1887 TFNITAGNRERAFFINATTGIVTVNRPLDRERIPEYKLTISVKDNPENPRIARRDYDLLLIFLSD 1951
Human 1952 ENDNHPLFTKSTYQAEVMENSPAGTPLTVLNGPILALDADQDIYAVVTYQLLGAQSGLFDINSST 2016
Human 2017 GVVTVRSGVIIDREAFSPPILELLLLAEDIGLLNSTAHLLITILDDNDNRPTFSPATLTVHLLEN 2081
Human 2082 CPPGFSVLQVTATDEDSGLNGELVYRIEAGAQDRFLIHLVTGVIRVGNATIDREEQESYRLTVVA 2146
Human 2147 TDRGTVPLSGTAIVTILIDDINDSRPEFLNPIQTVSVLESAEPGTVIANITAIDHDLNPKLEYHI 2211
Human 2212 VGIVAKDDTDRLVPNQEDAFAVNINTGSVMVKSPMNRELVATYEVTLSVIDNASDLPERSVSVPN 2276
Human 2277 AKLTVNVLDVNDNTPQFKPFGITYYMERILEGATPGTTLIAVAAVDPDKGLNGLVTYTLLDLVPP 2341
Human 2342 GYVQLEDSSAGKVIANRTVDYEEVHWLNFTVRASDNGSPPRAAEIPVYLEIVDINDNNPIFDQPS 2406
Human 2407 YQEAVFEDVPVGTIILTVTATDADSGNFALIEYSLGDGESKFAINPTTGDIYVLSSLDREKKDHY 2471
Human 2472 ILTALAKDNPGDVASNRRENSVQVVIQVLDVNDCRPQFSKPQFSTSVYENEPAGTSVITMMATDQ 2536
Human 2537 DEGPNGELTYSLEGPGVEAFHVDMDSGLVTTQRPLQSYEKFSLTVVATDGGEPPLWGTTMLLVEV 2601
Human 2602 IDVNDNRPVFVRPPNGTILHIREEIPLRSNVYEVYATDKDEGLNGAVRYSFLKTAGNRDWEFFII 2666
Human 2667 DPISGLIQTAQRLDRESQAVYSLILVASDLGQPVPYETMQPLQVALEDIDDNEPLFVRPPKGSPQ 2731
Human 2732 YQLLTVPEHSPRGTLVGNVTGAVDADEGPNAIVYYFIAAGNEEKNFHLQPDGCLLVLRDLDRERE 2796
Human 2797 AIFSFIVKASSNRSWTPPRGPSPTLDLVADLTLQEVRVVLEDINDQPPRFTKAEYTAGVATDAKV 2861
Human 2862 GSELIQVLALDADIGNNSLVFYSILAIHYFRALANDSEDVGQVFTMGSMDGILRTFDLFMAYSPG 2926
Human 2927 YFVVDIVARDLAGHNDTAIIGIYILRDDQRVKIVINEIPDRVRGFEEEFIHLLSNITGAIVNTDN 2991
Human 2992 VQFHVDKKGRVNFAQTELLIHVVNRDTNRILDVDRVIQMIDENKEQLRNLFRNYNVLDVQPAISV 3056
Human 3057 RLPDDMSALQMAIIVLAILLFLAAMLFVLMNWYYRTVHKRKLKAIVAGSAGNRGFIDIMDMPNTN 3121
Human 3122 KYSFDGANPVWLDPFCRNLELAAQAEHEDDLPENLSEIADLWNSPTRTHGTFGREPAAVKPDDDR 3186
Human 3187 YLRAAIQEYDNIAKLGQIIREGPIKGSLLKVVLEDYLRLKKLFAQRMVQKASSCHSSISELIQTE 3251
Human 3252 LDEEPGDHSPGQGSLRFRHKPPVELKGPDGIHVVHGSTGTLLATDLNSLPEEDQKGLGRSLETLT 3316
Human 3317 AAEATAFERNARTESAKSTPLHKLRDVIMETPLEITEL 3354 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| CDH23 | NP_071407.4 | Cadherin_repeat | 42..128 | CDD:206637 | 84/85 (99%) |
| Cadherin_repeat | 136..231 | CDD:206637 | 93/94 (99%) | ||
| Cadherin_repeat | 240..344 | CDD:206637 | 99/103 (96%) | ||
| Cadherin_repeat | 352..456 | CDD:206637 | 101/103 (98%) | ||
| Cadherin_repeat | 465..557 | CDD:206637 | 86/91 (95%) | ||
| Cadherin_repeat | 566..667 | CDD:206637 | 94/100 (94%) | ||
| Cadherin_repeat | 676..774 | CDD:206637 | 94/97 (97%) | ||
| Cadherin_repeat | 782..886 | CDD:206637 | 100/103 (97%) | ||
| Cadherin_repeat | 894..990 | CDD:206637 | 87/95 (92%) | ||
| Cadherin_repeat | 999..1098 | CDD:206637 | 94/98 (96%) | ||
| Cadherin_repeat | 1106..1203 | CDD:206637 | 89/96 (93%) | ||
| Cadherin_repeat | 1218..1308 | CDD:206637 | 82/89 (92%) | ||
| Cadherin_repeat | 1317..1414 | CDD:206637 | 89/96 (93%) | ||
| Cadherin_repeat | 1426..1523 | CDD:206637 | 87/96 (91%) | ||
| Cadherin_repeat | 1533..1630 | CDD:206637 | 91/96 (95%) | ||
| Cadherin_repeat | 1638..1740 | CDD:206637 | 94/101 (93%) | ||
| Cadherin_repeat | 1752..1847 | CDD:206637 | 90/94 (96%) | ||
| Cadherin_repeat | 1855..1955 | CDD:206637 | 91/99 (92%) | ||
| Cadherin_repeat | 1963..2065 | CDD:206637 | 87/101 (86%) | ||
| Cadherin_repeat | 2075..2169 | CDD:206637 | 90/93 (97%) | ||
| Cadherin_repeat | 2180..2289 | CDD:206637 | 99/108 (92%) | ||
| Cadherin_repeat | 2301..2398 | CDD:206637 | 92/96 (96%) | ||
| Cadherin_repeat | 2406..2504 | CDD:206637 | 90/97 (93%) | ||
| Cadherin_repeat | 2513..2607 | CDD:206637 | 86/93 (92%) | ||
| Cadherin_repeat | 2620..2718 | CDD:206637 | 91/97 (94%) | ||
| Cadherin_repeat | 2735..2841 | CDD:206637 | 99/105 (94%) | ||
| Cadherin_repeat | 2850..2951 | CDD:206637 | 98/100 (98%) | ||
| Cdh23 | XP_063134984.1 | None | |||