DRSC/TRiP Functional Genomics Resources

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Protein Alignment SEMA3F and Sema1a

DIOPT Version :10

Sequence 1:NP_004177.3 Gene:SEMA3F / 6405 HGNCID:10728 Length:785 Species:Homo sapiens
Sequence 2:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster


Alignment Length:849 Identity:220/849 - (25%)
Similarity:362/849 - (42%) Gaps:199/849 - (23%)


- Green bases have known domain annotations that are detailed below.


Human     7 LLWASLLTG---AWPSFPTQDHLPATPRVRLSFKE-LKATGTA----HFFNFLLNTTDYRILLKD 63
            ||...|:.|   ||     |:::.....|.|..:: ||..|..    ||            .|..
  Fly    54 LLLTVLVIGNQSAW-----QENIRPKLYVELGPEDVLKFVGNESVVDHF------------KLVT 101

Human    64 EDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVRLIQPWNRT 128
            :|.:.:.:|:::.|.:|.:||:..:..:: |.:.....:.|::.|||... |.|::|::...:..
  Fly   102 KDGNSLLIGARNTVFNLSIHDLVEQQRLV-WTSPEDDTKMCLVKGKDEEA-CQNYIRIMVVPSPG 164

Human   129 HLYVCGTGAYNPMC-TYVNRGRRAQATPWTQTQAVRGRGSRATDGALRPMPTAPRQDYIFYLEPE 192
            .|:||||.::.||| ||:                                    ..|..:.||..
  Fly   165 RLFVCGTNSFRPMCNTYI------------------------------------ISDSNYTLEAT 193

Human   193 RLESGKGKCPYDPKLDTASALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPS 257
            :  :|:..|||||:.::.|.|.:.|||:|...||.|:|..|:|     ..::|:||:|..||.|:
  Fly   194 K--NGQAVCPYDPRHNSTSVLADNELYSGTVADFSGSDPIIYR-----EPLQTEQYDSLSLNAPN 251

Human   258 FIHAELIPDSAERNDDKLYFFFRERSAEAPQ-SPAVYARIGRICLNDDGGHCCLVNKWSTFLKAR 321
            |:       |:....|.:||||||.:.|... ..|:|:|:.|:|..|.||.....|:|::|||:|
  Fly   252 FV-------SSFTQGDFVYFFFRETAVEFINCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSR 309

Human   322 LVCSVPGEDGIETHFDELQ---DVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVF 383
            |.||:||:  ...:|:|:|   ::...|...:.:.:||.||.:..:...|||||.:::.||...|
  Fly   310 LNCSIPGD--YPFYFNEIQSASNLVEGQYGSMSSKLIYGVFNTPSNSIPGSAVCAFALQDIADTF 372

Human   384 NGPFAHKEGPNYQWMPF-SGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYP 447
            .|.|..:.|.|..|:|. :.|:|.||||:|        ...::..||..:||:::|.||.:.|..
  Fly   373 EGQFKEQTGINSNWLPVNNAKVPDPRPGSC--------HNDSRALPDPTLNFIKTHSLMDENVPA 429

Human   448 LQRRPLVVRTGAPYRLTTIAVD-QVDAADGR-YEVLFLGTDRGTVQKVIVLPKDD--QELEELML 508
            ...:|::|||...||.|.|||| |:....|: |:|:|:|||.|.:.|.:.....|  .::..:::
  Fly   430 FFSQPILVRTSTIYRFTQIAVDAQIKTPGGKTYDVIFVGTDHGKIIKSVNAESADSADKVTSVVI 494

Human   509 EEVEVFKDPAPVKTMTISSKRQ------------QLYVASAVGVTHLSLHRCQAYG-AACADCCL 560
            ||::|.....|::.:.|....|            :|.:.:...|..:.||||.... .:|::|..
  Fly   495 EEIDVLTKSEPIRNLEIVRTMQYDQPKDGSYDDGKLIIVTDSQVVAIQLHRCHNDKITSCSECVA 559

Human   561 ARDPYCAWDGQACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLE 625
            .:|||||||       ..:.|.||      ||.|    |....|.....|.:.|:....|...  
  Fly   560 LQDPYCAWD-------KIAGKCRS------HGAP----RWLEENYFYQNVATGQHAACPSGKI-- 605

Human   626 CQPRSPQATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLY----------SCTA 680
               .|..|..                .|.:..|.:..||....|..|:.:.          ..:|
  Fly   606 ---NSKDANA----------------GEQKGFRNDMDLLDSRRQSKDQEIIDNIDKNFEGPQISA 651

Human   681 TENNFKHVVTRVQLHVLGRDAVHAALFPPL-----------------SMSAPPPP---------- 718
            ...|.::.|..:.:.||.     .::|..|                 ..:.|.|.          
  Fly   652 DIINAQYTVETLVMAVLA-----GSIFSLLVGFFTGYFCGRRCHKDEDDNLPYPDTEYEYFEQRQ 711

Human   719 --GAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWRHVPPSPREAPGAPRSPEPQDQKKPRNRRHH 781
              .:.|.:...|:..:||.|.|.   ..|.:......||.|.:.    .||:...:|.|.::.|.
  Fly   712 NVNSFPSSCRIQQEPKLLPQVEE---VTYAEPVLLPQPPPPNKM----HSPKNTLRKPPMHQMHQ 769

Human   782 PPDT 785
            .|::
  Fly   770 GPNS 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SEMA3FNP_004177.3 Sema_3F 48..548 CDD:200515 151/521 (29%)
PSI 547..584 CDD:214655 12/37 (32%)
Ig_Sema3 608..697 CDD:409455 14/98 (14%)
Ig strand A 608..614 CDD:409455 1/5 (20%)
Ig strand B 619..627 CDD:409455 1/7 (14%)
Ig strand C 633..639 CDD:409455 1/5 (20%)
Ig strand C' 641..644 CDD:409455 0/2 (0%)
Ig strand D 654..658 CDD:409455 0/3 (0%)
Ig strand E 661..668 CDD:409455 2/6 (33%)
Ig strand F 674..683 CDD:409455 1/18 (6%)
Ig strand G 686..697 CDD:409455 1/10 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 752..785 9/32 (28%)
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 153/528 (29%)
PSI 545..601 CDD:396154 21/72 (29%)

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