DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SELP and hig

DIOPT Version :9

Sequence 1:NP_002996.2 Gene:SELP / 6403 HGNCID:10721 Length:830 Species:Homo sapiens
Sequence 2:NP_724773.1 Gene:hig / 35949 FlyBaseID:FBgn0010114 Length:958 Species:Drosophila melanogaster


Alignment Length:584 Identity:143/584 - (24%)
Similarity:212/584 - (36%) Gaps:167/584 - (28%)


- Green bases have known domain annotations that are detailed below.


Human   199 ECGELELPQHVLMNCSHPLGNFSFNSQCSFHCTDGYQV-----------NGPSKLECLASGIWTN 252
            |..|:..|..:     .|:|:   ...|...|..|..|           ||..|.:.|......|
  Fly   457 EVSEIRFPGEI-----GPMGD---RRLCKIRCVKGKWVGPLCATNEEDDNGNVKFQPLYKSCHVN 513

Human   253 KPPQCLAAQCPPLKI----PERG-------NMTCLHSAKA-----FQHQSSCSFSCEE-G-FALV 299
            :.|..|......:.:    |.||       ..|.|.:.:.     ..|..|....|:| | :.|:
  Fly   514 RIPSHLLLSYRNISVTPIPPNRGWRKTRLSKSTLLSNTEINVGWDLPHGHSLQARCQELGIYKLL 578

Human   300 GPEVVQCTASGVWTAPAPVC-------------------KAVQCQH-------LEAPSEGT--MD 336
            |...|.| ::|:|....|.|                   |.....|       :..|...|  ||
  Fly   579 GESRVLC-SNGLWAPRMPSCVPTTVLTNYSEDSAPSIRIKIFNGSHSFEPSGVMAVPPHSTVLMD 642

Human   337 CVHPLTAFAYGSSCKFECQPGYRVRGLDMLRCIDSGHWS------------APLPTCEAI----S 385
            |::|                  ||||        :..||            :|....:|:    |
  Fly   643 CMYP------------------RVRG--------TPEWSWTSWYMQYSTGWSPAQEEKAVRYRLS 681

Human   386 CEPLESPVHGSMDC-SPSLRAFQYDTNCSFRCAEGFMLRGADIVRCDNLGQWTAP-APVCQALQC 448
            .:.:|:...|:..| ||                .|.....|.:|......|.|.| ||:...|:.
  Fly   682 IKNIENNDSGTFTCTSP----------------RGLTNSIAVVVATSTCPQLTEPLAPLKLRLEG 730

Human   449 QDLPVPNEARVNCSHPFGAFRYQSVCSFTCNEGLLLVGASVLQCLATGNWNSVPPECQAIPCTPL 513
            ..|.       ..:|            :.|.||..|.||....|||:|||:|..|.|.||.| |.
  Fly   731 NKLG-------QRAH------------YECPEGFRLDGAWNATCLASGNWSSPTPTCHAIQC-PR 775

Human   514 LSPQNGTMTCVQPLGSSSYKSTCQFICDEGYSLSGPERLDCTRSGRWTDSPPMCEAIKCPELFAP 578
            |...:..::.:: |.:|:: ....|.|..|:.|:||.:|||..||.|:...|.|:.|:|....||
  Fly   776 LELDDPHLSLIE-LNTSAW-GRAVFKCQWGFKLTGPAQLDCEPSGVWSGPVPRCKVIQCVMPVAP 838

Human   579 EQGSL-DCSDTRGEFNVGSTCHFSCDNGFKLEGPNNVECTTSGRWSATPPTCKGIASLPTPGVQC 642
            ..|.: ..|.::....||:...|||::|..|.|.:::.||.:|:||.:||.||.         ||
  Fly   839 LNGRIGGTSLSQRRLTVGALVTFSCNDGHSLVGESSIICTENGQWSHSPPFCKS---------QC 894

Human   643 PALTTPGQGTMYCRHHPGTFGFNTTCYFG--CNAGFTLIGD---STLSCRPSGQWTAVTPACRA 701
            |....|..|.:    .|..|.::...|..  |..||....:   ....|:|.|:|:...|.|::
  Fly   895 PYPGDPPNGLI----APLKFNYDAGDYLSVQCRPGFVQSYEGPPERPKCQPDGRWSGPMPKCKS 954

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SELPNP_002996.2 CLECT_selectins_like 42..160 CDD:153062
EGF_CA <168..195 CDD:238011
CCP 200..257 CDD:153056 14/67 (21%)
CCP 262..320 CDD:153056 18/94 (19%)
CCP 324..382 CDD:153056 14/78 (18%)
CCP 386..444 CDD:153056 13/59 (22%)
CCP 448..506 CDD:153056 16/57 (28%)
PHA02927 505..761 CDD:222943 62/203 (31%)
CCP 510..568 CDD:153056 18/57 (32%)
CCP 572..630 CDD:153056 20/58 (34%)
CCP 642..700 CDD:153056 15/62 (24%)
CCP 704..762 CDD:153056
Endocytosis signal. /evidence=ECO:0000305 818..821
Interaction with SNX17 821..830
higNP_724773.1 PHA02927 705..952 CDD:222943 85/281 (30%)
CCP 714..768 CDD:153056 22/72 (31%)
CCP <795..828 CDD:153056 13/32 (41%)
CCP 832..891 CDD:153056 20/58 (34%)
Sushi 894..952 CDD:278512 15/61 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19325
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5897
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
33.010

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