Sequence 1: | NP_001352465.1 | Gene: | SCN9A / 6335 | HGNCID: | 10597 | Length: | 1988 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_011733.3 | Gene: | CCH1 / 853131 | SGDID: | S000003449 | Length: | 2039 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 2002 | Identity: | 377/2002 - (18%) |
---|---|---|---|
Similarity: | 677/2002 - (33%) | Gaps: | 693/2002 - (34%) |
- Green bases have known domain annotations that are detailed below.
Human 69 GMVSEPLE----------------DLDPYYADKKTFIVLNKGKTIFRFNATP------------- 104
Human 105 ALYMLSPFSPLRRISIKILVHSLFSML---------IMCTILT----NCIFMTMNNPPDWTKNVE 156
Human 157 YTFTGIYTFESLVKILARGF--------------------------------------------- 176
Human 177 ---CVGEFT-----------------------------FLRDPWNWLDFVVIVFAYLTEFVNLGN 209
Human 210 V---SALRTFR---VLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFM 268
Human 269 GNLKHKC-FRNSLENNETLESIM----NTLESEEDFRKYFYYLEGSKDALLCGFSTDSGQCPEGY 328
Human 329 TCVKIGRNPDYGYTSFDTFSWAFLALFRLMTQDYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYL 393
Human 394 INLILAVVAMAYEEQNQANIEEAKQKELEFQQMLDRLKKEQEEAEAIAAAAAEYTSIRRSRIMGL 458
Human 459 SESSSETSKLSSKSAKERRNRRKKKNQKKLSSGEEKGDAEKLSKSESEDSIRRKSFHLGVEGHRR 523
Human 524 AHEKRLSTPNQSPLSIRGSLFSARRSSRTSLFSFKGRGRDIGSETEFADDEHSIFGDNESRRGSL 588
Human 589 FVPHRPQERRSSNISQASRSPPMLPVNGKMHSAVDCNGVVSLVDGRSALMLPNGQLLPEVIIDKA 653
Human 654 TSDDSGTTNQIHKKRRCSSYLLSEDMLNDPNLRQRAMSRASILTNTVEELEESRQKCPPWWYRFA 718
Human 719 HKFLIWNCSPYWIKFKKCIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTEEFKNVLAIGNLVF 783
Human 784 TGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLADVEG--------LSVL---RSF 837
Human 838 RLLRVFKLAKS-WPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIND 901
Human 902 DCTLPRWHMNDFFHSFLIVFRVLCGE-WIETMWDCME----VAGQAMCLIVYMMVMVIGNLVVLN 961
Human 962 LFLALLLSSFSSDNLTAIEEDPDANNLQIAVTRIKKGINYVKQTLREFILKAFSKKPKISREIRQ 1026
Human 1027 AEDLNTKKENYISNHTLAEMSKGHNFLKEKDKISGFGSSVDKHLMEDSDGQSFIHNPS------- 1084
Human 1085 ---LTVTVPIAPGESDLENMNAEELSSDSDSEYSKVRLNRSSSSECSTVDNPLPG-----EGEEA 1141
Human 1142 EAEPMNSDEPEACFTDGCVW-----RFSCCQVNIESGKGKIWWNIRKTCYKIVEHSWFESFIVLM 1201
Human 1202 ILLSSGALAFED-------------------IYIERKKTIKIIL--------------------- 1226
Human 1227 EYADKIFTYIFILEMLLKWIAYGY----KTYFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIK 1287
Human 1288 SLRTLRALRPLRALSRFEGMRVVVN-ALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYECI 1351
Human 1352 NTTDGSRFPASQVPNRSECFALMNVSQN--VRWKNLK--------VNFDNVGLGYLSLLQVATFK 1406
Human 1407 GWTIIMYAAVDSVNVDKQPKYEYSLYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQD 1471
Human 1472 IFMTEEQKKYYNAMKKLGSKKPQKPIPR--PGNKIQGCIFDLVT---NQAFDISIMVLICLNMVT 1531
Human 1532 MMVEKEGQSQHMTEVLYWINVVFIILFTGECVLKLISLR------HYYFTVGWNIFDFVVVIISI 1590
Human 1591 V-------------------GMFLADLIETYFVSP---TLFRVIRLARIGRILRLVKGAKGIRTL 1633
Human 1634 LFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEDGINDMFNFETFGNSMICLFQITTSA 1698
Human 1699 GWDGLLAPILNSKPPDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENF 1763
Human 1764 SVATEE--STEPLSEDDFEMFYEVWEKFDPDATQFIEFSKLSDFAAALDPPL 1813 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SCN9A | NP_001352465.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 26..55 | ||
I. /evidence=ECO:0000305 | 112..410 | 84/398 (21%) | |||
Ion_trans | 125..410 | CDD:306908 | 80/385 (21%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 461..543 | 9/81 (11%) | |||
Na_trans_cytopl | 488..681 | CDD:314757 | 12/192 (6%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 565..611 | 5/45 (11%) | |||
II. /evidence=ECO:0000305 | 726..989 | 58/279 (21%) | |||
Ion_trans | 743..956 | CDD:306908 | 46/229 (20%) | ||
Na_trans_assoc | 982..1187 | CDD:310839 | 34/224 (15%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1102..1148 | 10/50 (20%) | |||
III. /evidence=ECO:0000305 | 1180..1488 | 76/362 (21%) | |||
Ion_trans | 1191..1466 | CDD:306908 | 68/329 (21%) | ||
Na_channel_gate | 1458..1510 | CDD:240441 | 13/53 (25%) | ||
IV. /evidence=ECO:0000305 | 1497..1795 | 72/332 (22%) | |||
Ion_trans | 1514..1770 | CDD:306908 | 62/285 (22%) | ||
GPHH | 1774..1837 | CDD:318993 | 13/40 (33%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1934..1988 | ||||
CCH1 | NP_011733.3 | Ion_trans | <483..722 | CDD:395416 | 62/248 (25%) |
Ion_trans | 769..1010 | CDD:395416 | 71/435 (16%) | ||
Ion_trans | 1210..1480 | CDD:395416 | 63/287 (22%) | ||
Ion_trans | 1529..1776 | CDD:395416 | 62/281 (22%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 87 | 1.000 | Domainoid score | I2034 |
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 319 | 1.000 | Inparanoid score | I518 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.860 |