Sequence 1: | NP_001352465.1 | Gene: | SCN9A / 6335 | HGNCID: | 10597 | Length: | 1988 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001355464.1 | Gene: | unc-2 / 180570 | WormBaseID: | WBGene00006742 | Length: | 2171 | Species: | Caenorhabditis elegans |
Alignment Length: | 1964 | Identity: | 483/1964 - (24%) |
---|---|---|---|
Similarity: | 809/1964 - (41%) | Gaps: | 503/1964 - (25%) |
- Green bases have known domain annotations that are detailed below.
Human 18 QSLALIEQRIAERKSKEPKEEKK---DDDEEAPKPS-------SD-----------LEAGKQLPF 61
Human 62 IYGDIPPGMVSEPLEDLDPYYADKKTFIVLNKGKTIFRFNA------TPALYMLSPFSPLRRISI 120
Human 121 KILVHSLFSMLIMCTILTNCIFMTMNNP---------PDWTKNVEYTFTGIYTFESLVKILARGF 176
Human 177 CVGEFTFLRDPWNWLDFVVIVFAYLT------------EFVNLGNVSALRTFRVLRALKTISVIP 229
Human 230 GLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRNSLENNETLESIMNTLE 294
Human 295 SEEDFRKYFYYLEGSKDALLCGFSTDSGQCP-EGYTCVKIGRNPDYGYTSFDTFSWAFLALFRLM 358
Human 359 TQDYWENLYQQTLRAAGKTY-MIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKE-L 421
Human 422 EFQQMLDRLKKEQEEAEAIAA-----AAAEYTSIRRSRIMGLSESSSETSKLSSKSAKERRNRRK 481
Human 482 KKNQKKLSSGEEKGDAEKLSKSESEDSIRRKSFHLGVEGHRRAHEKRLSTPNQSPLSIRGSLFSA 546
Human 547 RRSSRTSLFSFKGRGRDIGSETEFADDEHSIFGDNESRRGSLFVPHRPQERRSSNISQASRSPPM 611
Human 612 LPVNGKMHSAVDCNGVVSLVDGRSALMLPNGQLLPEVIIDKATSDDSGTTNQIHKKRRCSSYLLS 676
Human 677 EDMLNDPNLRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHKFLIWNCSPYWIKFKKCIYFIV 741
Human 742 MDPFVDLAITICIVLNTLFMAMEHHPMTEEFKNVLAIGNLVFTGIFAAEMVLKLIAMDPYEYFQV 806
Human 807 GWNIFDSLIVTLSLVELFLADVE----GLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALG 867
Human 868 NLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINDDCTLPRWHMNDFFHSFLIVFRVLCGE-WIET 931
Human 932 MWDCMEVAGQAMC----LIVYMMVMVI-GNLVVLNLFLALLLSSF-SSDNLTAIEE-DPDANNLQ 989
Human 990 IAVTRIKKGINYVKQTLREFILKAFSKKPKISREIRQAEDLNTKKENYISNHTLAEMSKGHNFLK 1054
Human 1055 EKDKISGFGSSVDKHLMEDSDGQSFIHNPSLTVTVPIAPGESDLENMNAEELSSDSDSEYSKVRL 1119
Human 1120 NRSSSSECSTVDNPLPGEGEEAEAEPMNSDEPEACFTDGCVWRFSCCQVNIESGKGKIWWNIRKT 1184
Human 1185 CYKIVEHSWFESFIVLMILLSSGALAFEDIYIERKKTIKIILEYADKIFTYIFILEMLLKWIAYG 1249
Human 1250 Y----KTYFTNAWCWLDFLIVDVSLVTL-VANTLGYS--DLGPIKSLRTLRALRPLRALSRFEGM 1307
Human 1308 RVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYECINTTDGSRFPASQVPNRSECFA 1372
Human 1373 LMNVSQNVR-----WKNLKVNFDNVGLGYLSLLQVATFKGWTIIMYAAVDSVNVDKQPKYEYSLY 1432
Human 1433 MYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQ-KKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKP 1496
Human 1497 IPRPGNKIQGCIFDLVTNQAFDISIMVLICLNMVTMMVEKEGQSQHMTEVLYWINVVFIILFTGE 1561
Human 1562 CVLKLIS--LRHYYFTVGWNIFDFVVVIISIVGMFLADLIETYFVSPTLFRVIRLARIGRILRLV 1624
Human 1625 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA--YVKKEDGINDMFNFETFGNS 1687
Human 1688 MICLFQITTSAGWDGLLAPILNSKPPDCDPKKVHPGSS----VEGD-CGNPSVGIFYFVSYIIIS 1747
Human 1748 FLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEFSKLSDFAAALDPP 1812
Human 1813 LLIAK--PNKV---QLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANP 1872
Human 1873 SKVSYEPITTTLKR 1886 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SCN9A | NP_001352465.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 26..55 | 8/49 (16%) | |
I. /evidence=ECO:0000305 | 112..410 | 85/320 (27%) | |||
Ion_trans | 125..410 | CDD:306908 | 82/307 (27%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 461..543 | 16/81 (20%) | |||
Na_trans_cytopl | 488..681 | CDD:314757 | 21/192 (11%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 565..611 | 6/45 (13%) | |||
II. /evidence=ECO:0000305 | 726..989 | 90/274 (33%) | |||
Ion_trans | 743..956 | CDD:306908 | 73/222 (33%) | ||
Na_trans_assoc | 982..1187 | CDD:310839 | 22/204 (11%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1102..1148 | 5/45 (11%) | |||
III. /evidence=ECO:0000305 | 1180..1488 | 99/320 (31%) | |||
Ion_trans | 1191..1466 | CDD:306908 | 93/287 (32%) | ||
Na_channel_gate | 1458..1510 | CDD:240441 | 9/52 (17%) | ||
IV. /evidence=ECO:0000305 | 1497..1795 | 100/306 (33%) | |||
Ion_trans | 1514..1770 | CDD:306908 | 86/264 (33%) | ||
GPHH | 1774..1837 | CDD:318993 | 18/67 (27%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1934..1988 | ||||
unc-2 | NP_001355464.1 | Ion_trans | 254..536 | CDD:366146 | 83/311 (27%) |
Ion_trans | 667..904 | CDD:366146 | 83/293 (28%) | ||
Ion_trans | 998..1279 | CDD:366146 | 93/286 (33%) | ||
Ion_trans | 1323..1577 | CDD:366146 | 86/265 (32%) | ||
GPHH | 1586..1639 | CDD:374878 | 16/52 (31%) | ||
Ca_chan_IQ | 1650..1726 | CDD:370105 | 11/47 (23%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |